Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1171 ATGTTCCATCACAAGAAGCCTTCTACTATGAATTCTCACGATAGACCCATGTGTGTTCAAGGTGACTCTGGCCTTGTCCTCACCACCGACCCAAAGCCCCGCCTCCGGTGGACTGTTGAGCTCCATGAACGCTTTGTTGATGCTGTCACTCAGCTTGGAGGACCTGATAAGGCCACCCCGAAGACCATCATGAGAGTCATGGGTGTAAAAGGTCTCACTCTTTACCATCTCAAGAGCCATCTCCAGAAATTCAGGCTTGGAAAGCAGCCACACAAGGAATTCAATGATCACTCAATTAAGGATGCTTCAGCATTAGAACTTCAAAGAAACATTGCATCTTCATCTGGGGTGATGAGCCGCAATACCAACGAGATGCAAATGGAGGTGCAAAGAAGGCTTCACGAACAACTGGAGGTCCAAAGACACCTCCAGTTGAGAATTGAAGCTCAAGGGAAGTACATGCAGACTATACTGGAGAAAGCTTGCCAGACACTTGCAGGTGAAAACATGGCTTTGGGAAACTACAAGGGTATCGGAAATCAAGGAGTTCCTGACATGGGAGCGATGAAGGATTTCGGTTCTTCCTTGAACTTTCCATCTCTTCAAGACCTAAACATTTATGGAGGTGACCAGCTTGACCTTCAACAAAGCATGGACAGATCACTTGATGGCTTCATACAGAATACTGAGAACATGTGTTTGGGAAAGAAGAGGCCTAGCCCTTATAGTGGTAATGATCCATTCAAGGGTGATCAAATTCAAATTGCACCACCATCAATGGATAGAGGAGCTGATATGGATTCCATATCCGACATTTATGAAACAAAGCCAATTCTCTCTGGTGATCCTATGGGAGAAAAGAAATTTGATGGGTCGGGGTCGGCAAAGCTTGGAAGGCCATCGCCACGTAGAGCACCACTTCCCACAGATAGGATGAATCCCATGATCAATGCTGGTGCCATGCCACAAGGAAGAAGTTCATACGGGTGA 990 46.36 MFHHKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVMSRNTNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLAGENMALGNYKGIGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLDLQQSMDRSLDGFIQNTENMCLGKKRPSPYSGNDPFKGDQIQIAPPSMDRGADMDSISDIYETKPILSGDPMGEKKFDGSGSAKLGRPSPRRAPLPTDRMNPMINAGAMPQGRSSYG* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23387999 23390312 + Vvi19g1171 Vvi19g1171 782670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1171 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Vvi19g1171 329 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Vvi19g1171 329 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Vvi19g1171 329 Pfam MYB-CC type transfactor, LHEQLE motif 124 164 IPR025756 -
Vvi19g1171 329 Gene3D - 31 89 - -
Vvi19g1171 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 244 IPR044848 GO:0003700
Vvi19g1171 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 244 - -
Vvi19g1171 329 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Vvi19g1171 329 MobiDBLite consensus disorder prediction 276 329 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14397 PF00249 Myb_DNA-binding 1.70E-06 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1171 - - vvi:100256921 655.595