Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1173 ATGGCCAATGCAACCCCCTTGCTCTCCCAATCTGAGTTATCTCAGCCTCTTTCACCATCTAGTTCGATAGAGTCTGAAACGCCAAGCGTTGAGAAAGTGCTTCCTTCCCTCGATGAGTTCATCGAGCAAAGCATAGGAGGCTTTGCATGGGCACAGTTGCTACATGCCATCCTTGTATCTTTGGCATGGTTGTTTGATGGGCAACAAACATTCATCTCCATCTTCACTGACGCGGAGCCAACATGGCACTGCAATCATCTCAGTACTGAGGATTGCAACTCAGGCCTGCCTGCTACCTCTTTCTTCATGGGGTGCTTGCTTGATCCAACCCCTCTCCTCTCCCAATCCCACTTGGCCGACCCAGAACCTATGCTCATTCCCAAACACCTCCCATCCCTCGACGAAACTTTCGAGCGATACATAGGAGATTTTGGGTGGGCTCAGCTTCTTCAAGCCTTCCTTGTGTCTTTTGCCTGGGTCTTTGATGCGCAACAAACCTTCATCAGCTTATTTACTGATGCTGAGCCTCCTTGGCACTGCACTGAACTCGGCACAGAGCTATGCACTTCCGTTTCTAACATCTGTCAGCTTCCCAAGGGCTCATGGGCGTGGGACCGAGCAGCGGACACCTCGATTGTATCGGAATGGACCCTTGTGTGTGCCGGGATTTTGACTATTTTCTCCCCAAATGTTTGGATCTACTCTGGGTTTAGATTCCTTTCTGGGTTTGGGCGTGCCACCATTGGAACATGTGCTATTGTGTTGTCGACAGAGCTCGTTGGAAAACGGTGGCGCAGCCAGGTGGGGGTATGCGTCCATTTCTTCGTTCGTGAGTCTCCTAGATGGCTTTTGGTGCGTGGACGAAAAGAAGAAGCTGTGGCAACACTGAAAAGTATAGGGGCTGTAAACAATATAGGATTTGGGGTGGGAATGGTGTACTATGGCATGCCGTTGGCGCTGGGAAACCTGCCTTTCAATCTCTACTGGAACGTCACTTTCAATGCCTTATCAGAGCTGCCCGCATCATTAATCGCTTTCTTCTTTATCGAGAGACTGAATAGGAAAAGTTCAGTGCTGGTTTTCACCATGACAAGTGGGGTTTGCAGTATCATGTGTGTGGTGATGGGTGAAGAATGGGCATCACTGAAGATTGGACTAGAACTGGTCTCATTCTTCAGCACATGCACCGCATTCGACATCTTACTAATATACACCATAGAGCTGTTTCCCACATGCGTTAGGAACTCGGCCATGGCGATGGTGAGGCAGGCGCTGGTGTTTGGGGGCGTGTTCTGCCCCGTTATAGTGGAAATCGGCATGGGAAACGGGTACTTGTCGTATGGAGTTTTCGGAGTAGTGATAATAAGCTGTGGGCTGTTTGTGGGATGCTTGCCAGAGACAAAGGGTGGGACACTTTGTGACACAATGGAGGAAGAAGAAAACAAGGAGAGAGCAGCACATCTTCACCACCCTACTCACAAACACAAGCACAAGCTCACATACATGGCAGATTCAACCCCTCTCCTCTCTCAATCCCACCCGGCCGACCCAGAACCTCTACTCATCCCCAAACACCTCCCATCCCTCGACGAAACTTTCGAGCGATACATAGGAGATTTTGGGTGGGCTCAGCTTCTTCAAGCCTTCCTTGTGTCTTTTGCCTGGGTCTTTGATGCTCAACAAACCTTCATCAGCGTATTTACTGATGCTGAGCCTCCTTGGCACTGCACTGAACTCGGCACAGAGCTATGCACTTCCAGCCTCCCTGCGTCTTCCTTCTTCACGGGCTGCATGGTTGGTGGACTTGTTCTTGCCACACTCGCCGACTCATCCTTCGGCCGCAAAAACATGTTATTCTTTTCATGTCTCCTGATGTCAGCTACTGGGATTTTGACTATTTTCTCCCCAAATGTTTGGATCTACTCTGGGTTTAGATTCCTTTCTGGGTTTGGGCGTGCCACCATTGGAACATGTGCTATTGTGTTGTCGACAGAGCTCGTTGGAAAACGGTGGCGTAGCCAGGTGGGGGTATTCCATTTCTTCGTTCGTGAGTCTCCTAGATGGCTTTTGGTGCGTGGCCGCAAAGAAGAAGCGGTGGCAACACTGAAAAGTATAGGGGCTGTAAACAATATAGGATTTGGGGTGGGAATGGTGTACTATGGCATGCCGTTGGCGCTGGGAAACCTGCCTTTCAATCTCTACTGGAACGTTACTTTCAATGCCTTATCAGAGCTGCCCGCATCATTAATCGCTTTCTTCTTTATCGAGAGACTGAATAGGAAAAGTTCAGTGCTGGTTTTCACCATGACAAGTGGGGTTTGCAGTATCATGTGTGTGGTGATGGGTGAAGAATGGGCATCACTGAAGATTGGACTAGAACTGGTCTCATTCTTCAGCACATGCACCGCATTCGACATCTTACTAATATACACCATAGAGCTGTTTCCCACATGCGTTAGGAACTCGGCCATGGCGATGGTGAGGCAGGCGCTGGTGTTTGGGGGAGTGTTCTGCCCCGTTATAGTGGAAATCGGAAGGGGAAACGGGTACTTGTCGTATGGAGTTTTCGGAGTAGTGATAATAAGCTGTGGGCTGTTTGAGAAGTACTCTCCGAATTCCAACACCCTTGGCAGCAATCAGCATATCGGAAGGAAAGCTGGTCCCTCAAGCCCGCGTCTCTCTCATAACCTCCAAAACAGAGCATCTATGGGCTGCCCCTCCCTCGGCACATCCCCTGTTTTCGTTATTCGGTTTGTCCGGGTGGGATAG 2769 49.8 MANATPLLSQSELSQPLSPSSSIESETPSVEKVLPSLDEFIEQSIGGFAWAQLLHAILVSLAWLFDGQQTFISIFTDAEPTWHCNHLSTEDCNSGLPATSFFMGCLLDPTPLLSQSHLADPEPMLIPKHLPSLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQTFISLFTDAEPPWHCTELGTELCTSVSNICQLPKGSWAWDRAADTSIVSEWTLVCAGILTIFSPNVWIYSGFRFLSGFGRATIGTCAIVLSTELVGKRWRSQVGVCVHFFVRESPRWLLVRGRKEEAVATLKSIGAVNNIGFGVGMVYYGMPLALGNLPFNLYWNVTFNALSELPASLIAFFFIERLNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFFSTCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGVFCPVIVEIGMGNGYLSYGVFGVVIISCGLFVGCLPETKGGTLCDTMEEEENKERAAHLHHPTHKHKHKLTYMADSTPLLSQSHPADPEPLLIPKHLPSLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQTFISVFTDAEPPWHCTELGTELCTSSLPASSFFTGCMVGGLVLATLADSSFGRKNMLFFSCLLMSATGILTIFSPNVWIYSGFRFLSGFGRATIGTCAIVLSTELVGKRWRSQVGVFHFFVRESPRWLLVRGRKEEAVATLKSIGAVNNIGFGVGMVYYGMPLALGNLPFNLYWNVTFNALSELPASLIAFFFIERLNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFFSTCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGVFCPVIVEIGRGNGYLSYGVFGVVIISCGLFEKYSPNSNTLGSNQHIGRKAGPSSPRLSHNLQNRASMGCPSLGTSPVFVIRFVRVG* 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23412508 23437714 + Vvi19g1173 Vvi19g1173 782672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 305 477 IPR036259 -
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 712 868 IPR036259 -
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 541 681 IPR036259 -
Vvi19g1173 922 MobiDBLite consensus disorder prediction 1 28 - -
Vvi19g1173 922 Pfam Sugar (and other) transporter 582 678 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 32 94 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 127 222 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 272 304 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 523 586 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 708 868 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 678 710 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 302 485 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 586 682 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 221 273 - -
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 151 276 IPR036259 -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 708 868 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 221 273 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 586 682 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 523 586 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 127 222 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 272 304 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 678 710 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 302 485 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 32 94 - -
Vvi19g1173 922 SUPERFAMILY MFS general substrate transporter 217 472 IPR036259 -
Vvi19g1173 922 SUPERFAMILY MFS general substrate transporter 540 861 IPR036259 -
Vvi19g1173 922 Gene3D MFS transporter, transmembrane helix TM10b 684 711 - -
Vvi19g1173 922 Gene3D MFS transporter, transmembrane helix TM10b 278 304 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1173 - - vvi:100251788 706.057