Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1173 ATGGCCAATGCAACCCCCTTGCTCTCCCAATCTGAGTTATCTCAGCCTCTTTCACCATCTAGTTCGATAGAGTCTGAAACGCCAAGCGTTGAGAAAGTGCTTCCTTCCCTCGATGAGTTCATCGAGCAAAGCATAGGAGGCTTTGCATGGGCACAGTTGCTACATGCCATCCTTGTATCTTTGGCATGGTTGTTTGATGGGCAACAAACATTCATCTCCATCTTCACTGACGCGGAGCCAACATGGCACTGCAATCATCTCAGTACTGAGGATTGCAACTCAGGCCTGCCTGCTACCTCTTTCTTCATGGGGTGCTTGCTTGATCCAACCCCTCTCCTCTCCCAATCCCACTTGGCCGACCCAGAACCTATGCTCATTCCCAAACACCTCCCATCCCTCGACGAAACTTTCGAGCGATACATAGGAGATTTTGGGTGGGCTCAGCTTCTTCAAGCCTTCCTTGTGTCTTTTGCCTGGGTCTTTGATGCGCAACAAACCTTCATCAGCTTATTTACTGATGCTGAGCCTCCTTGGCACTGCACTGAACTCGGCACAGAGCTATGCACTTCCGTTTCTAACATCTGTCAGCTTCCCAAGGGCTCATGGGCGTGGGACCGAGCAGCGGACACCTCGATTGTATCGGAATGGACCCTTGTGTGTGCCGGGATTTTGACTATTTTCTCCCCAAATGTTTGGATCTACTCTGGGTTTAGATTCCTTTCTGGGTTTGGGCGTGCCACCATTGGAACATGTGCTATTGTGTTGTCGACAGAGCTCGTTGGAAAACGGTGGCGCAGCCAGGTGGGGGTATGCGTCCATTTCTTCGTTCGTGAGTCTCCTAGATGGCTTTTGGTGCGTGGACGAAAAGAAGAAGCTGTGGCAACACTGAAAAGTATAGGGGCTGTAAACAATATAGGATTTGGGGTGGGAATGGTGTACTATGGCATGCCGTTGGCGCTGGGAAACCTGCCTTTCAATCTCTACTGGAACGTCACTTTCAATGCCTTATCAGAGCTGCCCGCATCATTAATCGCTTTCTTCTTTATCGAGAGACTGAATAGGAAAAGTTCAGTGCTGGTTTTCACCATGACAAGTGGGGTTTGCAGTATCATGTGTGTGGTGATGGGTGAAGAATGGGCATCACTGAAGATTGGACTAGAACTGGTCTCATTCTTCAGCACATGCACCGCATTCGACATCTTACTAATATACACCATAGAGCTGTTTCCCACATGCGTTAGGAACTCGGCCATGGCGATGGTGAGGCAGGCGCTGGTGTTTGGGGGCGTGTTCTGCCCCGTTATAGTGGAAATCGGCATGGGAAACGGGTACTTGTCGTATGGAGTTTTCGGAGTAGTGATAATAAGCTGTGGGCTGTTTGTGGGATGCTTGCCAGAGACAAAGGGTGGGACACTTTGTGACACAATGGAGGAAGAAGAAAACAAGGAGAGAGCAGCACATCTTCACCACCCTACTCACAAACACAAGCACAAGCTCACATACATGGCAGATTCAACCCCTCTCCTCTCTCAATCCCACCCGGCCGACCCAGAACCTCTACTCATCCCCAAACACCTCCCATCCCTCGACGAAACTTTCGAGCGATACATAGGAGATTTTGGGTGGGCTCAGCTTCTTCAAGCCTTCCTTGTGTCTTTTGCCTGGGTCTTTGATGCTCAACAAACCTTCATCAGCGTATTTACTGATGCTGAGCCTCCTTGGCACTGCACTGAACTCGGCACAGAGCTATGCACTTCCAGCCTCCCTGCGTCTTCCTTCTTCACGGGCTGCATGGTTGGTGGACTTGTTCTTGCCACACTCGCCGACTCATCCTTCGGCCGCAAAAACATGTTATTCTTTTCATGTCTCCTGATGTCAGCTACTGGGATTTTGACTATTTTCTCCCCAAATGTTTGGATCTACTCTGGGTTTAGATTCCTTTCTGGGTTTGGGCGTGCCACCATTGGAACATGTGCTATTGTGTTGTCGACAGAGCTCGTTGGAAAACGGTGGCGTAGCCAGGTGGGGGTATTCCATTTCTTCGTTCGTGAGTCTCCTAGATGGCTTTTGGTGCGTGGCCGCAAAGAAGAAGCGGTGGCAACACTGAAAAGTATAGGGGCTGTAAACAATATAGGATTTGGGGTGGGAATGGTGTACTATGGCATGCCGTTGGCGCTGGGAAACCTGCCTTTCAATCTCTACTGGAACGTTACTTTCAATGCCTTATCAGAGCTGCCCGCATCATTAATCGCTTTCTTCTTTATCGAGAGACTGAATAGGAAAAGTTCAGTGCTGGTTTTCACCATGACAAGTGGGGTTTGCAGTATCATGTGTGTGGTGATGGGTGAAGAATGGGCATCACTGAAGATTGGACTAGAACTGGTCTCATTCTTCAGCACATGCACCGCATTCGACATCTTACTAATATACACCATAGAGCTGTTTCCCACATGCGTTAGGAACTCGGCCATGGCGATGGTGAGGCAGGCGCTGGTGTTTGGGGGAGTGTTCTGCCCCGTTATAGTGGAAATCGGAAGGGGAAACGGGTACTTGTCGTATGGAGTTTTCGGAGTAGTGATAATAAGCTGTGGGCTGTTTGAGAAGTACTCTCCGAATTCCAACACCCTTGGCAGCAATCAGCATATCGGAAGGAAAGCTGGTCCCTCAAGCCCGCGTCTCTCTCATAACCTCCAAAACAGAGCATCTATGGGCTGCCCCTCCCTCGGCACATCCCCTGTTTTCGTTATTCGGTTTGTCCGGGTGGGATAG 2769 49.8 MANATPLLSQSELSQPLSPSSSIESETPSVEKVLPSLDEFIEQSIGGFAWAQLLHAILVSLAWLFDGQQTFISIFTDAEPTWHCNHLSTEDCNSGLPATSFFMGCLLDPTPLLSQSHLADPEPMLIPKHLPSLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQTFISLFTDAEPPWHCTELGTELCTSVSNICQLPKGSWAWDRAADTSIVSEWTLVCAGILTIFSPNVWIYSGFRFLSGFGRATIGTCAIVLSTELVGKRWRSQVGVCVHFFVRESPRWLLVRGRKEEAVATLKSIGAVNNIGFGVGMVYYGMPLALGNLPFNLYWNVTFNALSELPASLIAFFFIERLNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFFSTCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGVFCPVIVEIGMGNGYLSYGVFGVVIISCGLFVGCLPETKGGTLCDTMEEEENKERAAHLHHPTHKHKHKLTYMADSTPLLSQSHPADPEPLLIPKHLPSLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQTFISVFTDAEPPWHCTELGTELCTSSLPASSFFTGCMVGGLVLATLADSSFGRKNMLFFSCLLMSATGILTIFSPNVWIYSGFRFLSGFGRATIGTCAIVLSTELVGKRWRSQVGVFHFFVRESPRWLLVRGRKEEAVATLKSIGAVNNIGFGVGMVYYGMPLALGNLPFNLYWNVTFNALSELPASLIAFFFIERLNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFFSTCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGVFCPVIVEIGRGNGYLSYGVFGVVIISCGLFEKYSPNSNTLGSNQHIGRKAGPSSPRLSHNLQNRASMGCPSLGTSPVFVIRFVRVG* 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23412508 23437714 + Vvi19g1173 Vvi19g1173 782672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 305 477 IPR036259 -
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 712 868 IPR036259 -
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 541 681 IPR036259 -
Vvi19g1173 922 MobiDBLite consensus disorder prediction 1 28 - -
Vvi19g1173 922 Pfam Sugar (and other) transporter 582 678 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 32 94 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 127 222 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 272 304 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 523 586 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 708 868 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 678 710 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 302 485 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 586 682 - -
Vvi19g1173 922 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 221 273 - -
Vvi19g1173 922 Gene3D MFS general substrate transporter like domains 151 276 IPR036259 -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 708 868 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 221 273 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 586 682 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 523 586 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 127 222 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 272 304 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 678 710 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 302 485 - -
Vvi19g1173 922 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 32 94 - -
Vvi19g1173 922 SUPERFAMILY MFS general substrate transporter 217 472 IPR036259 -
Vvi19g1173 922 SUPERFAMILY MFS general substrate transporter 540 861 IPR036259 -
Vvi19g1173 922 Gene3D MFS transporter, transmembrane helix TM10b 684 711 - -
Vvi19g1173 922 Gene3D MFS transporter, transmembrane helix TM10b 278 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1173 - - - vvi:100251788 706.057
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1173 . Blo13g00608 . . . . Bma08g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015530 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 0 1 2 11