Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1175 ATGGGTCATCGCTGCTGCAGCAAACAGAAAGTTAAAAGAGGGTTGTGGTCTCCTGAAGAAGATGAAAAGCTTATCAGATACATCACTGCCCACGGCCATGGCAGTTGGAGTTCTGTTCCAAAACTTGCAGGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTATCATTGATGTCCACAGAATTTTAGGCAACAGATGGGCTCAGATAGCTAAGCATCTACCTGGGAGAACAGACAATGAGGTGAAGAATTTCTGGAACTCATGCATTAAGAAGAAGCTGATTTCACAAGGCTTGGATCCAAAGACTCACAATCTGATCTCTTCTCATCAGAGAAACACCTCTAATAAGGTTGTCTGCAGTCTACCCCAACCCCATCAACAACCCTTCCCGGTTTTCACTGTAAACCAACAGATGACAGATGATGCTTCCATGGAGGTGAACCGTCTCCCTCCTTTCGTTACACTACCACCTCTTCCACCTACCCAACCCTCATTGCAGCAAACCATGGCCATACCCAACTCTGAATATCAAAACCCCAATCCCGTTTGGACTGCTAAAGATCAGAGCTCTCAATATACAATCAGTTTCCCCTGTGGATCTTCCATTGGAAGCACACCCATTATTTCTTCATCATCTTCTTCTTCTGTAAACCCATTTGGCTTTGGTTTCTTAGACGAGAATTTGATCTGGAATGCTCATGTTGAACCTCTTGAAGGTCCAAGACTGGAACAAGTGCAAACACATCAATACCAAGATCAACATGACCAACAGAAGAACAAGATTAATATCGGTGAAATGGGAAATGATCATGAACAAAAGTGTGGTCAGGACATTGATGTCTCATTTGACAGCTCAAGTTTTGATCTTGAGTTCGTTGAGTCTACACTTCTGTCTGGCGCAATTTGTCAAGTACTTTCTTTAGTAAGTATACTGTATACATCAATGGTATTTAATATTTGCCAGGCAGATTGCATGTATGAGTGA 1050 42.57 MGHRCCSKQKVKRGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPELKRGSFSAQEEQSIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPKTHNLISSHQRNTSNKVVCSLPQPHQQPFPVFTVNQQMTDDASMEVNRLPPFVTLPPLPPTQPSLQQTMAIPNSEYQNPNPVWTAKDQSSQYTISFPCGSSIGSTPIISSSSSSSVNPFGFGFLDENLIWNAHVEPLEGPRLEQVQTHQYQDQHDQQKNKINIGEMGNDHEQKCGQDIDVSFDSSSFDLEFVESTLLSGAICQVLSLVSILYTSMVFNICQADCMYE* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23462616 23464298 + Vvi19g1175 Vvi19g1175 782674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1175 349 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vvi19g1175 349 CDD SANT 68 108 IPR001005 -
Vvi19g1175 349 Gene3D - 10 66 - -
Vvi19g1175 349 Gene3D - 68 140 - -
Vvi19g1175 349 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vvi19g1175 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vvi19g1175 349 CDD SANT 16 60 IPR001005 -
Vvi19g1175 349 SMART sant 65 113 IPR001005 -
Vvi19g1175 349 SMART sant 12 62 IPR001005 -
Vvi19g1175 349 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vvi19g1175 349 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 327 - -
Vvi19g1175 349 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Vvi19g1175 349 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vvi19g1175 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Vvi19g1175 349 PANTHER MYB DOMAIN PROTEIN 55 1 327 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14398 PF00249 Myb_DNA-binding 8.40E-15 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1175 K09422 - vvi:100248382 599.742