Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1176 ATGGCTCCCATGAGTCTTCCTCCTGGATTCAGATTCCACCCCACTGATGAGGAGCTTGTTGCTTACTACCTAGATCGAAAAATCAATGGTGGCACCATTGAGCTTGAAATAATCCCAGAGGTTGATCTCTACAAGTGTGAACCCTGGGATTTGCCAGATAAATCATTTTTACCAAGCAAAGATATGGAGTGGTACTTCTACAGTCCCAGGGATCGAAAGTACCCTAATGGGTCGAGAACTAACCGGGCGACCCGAGCTGGGTACTGGAAAGCCACTGGGAAAGACCGGGCAGTGCACTCTCAGAAGCGGCCGGTTGGCATGAAGAAGACTCTGGTATACTATAGAGGTCGAGCTCCCCATGGCCTTAGGACTAACTGGGTGATGCACGAGTACCGCCTCATTGATTCAATGTGTGGGTCCACCTCTTCTCTCAAGGATTCGTATGCATTATGCCGCATTTTCAAGAAGACGATACATGTGAGCAAAAACAAGGAAGAAGAGAATGCAAATGTGGGGAAGGAATCGGCTTGGGGCTTAGAGGAACATTTATCAGTGGATGACACAAGTGGAATTGAAAGTTCCCAGGGAAGAGAAGCTGGAGATGAAAATTTTGAGCAAGATTGCCCCAAATTTCCATCTGACACTTCTTCGTCGGATATCACTCAAGGAACACCCTTTGAAACTGGTGTAACAGATGATTTACAAGCTCAATTTCCCTCAGATGAAGCTAACAGTTCAGCTAATTTGTACTCTCTCAATGTGCAGTACTACTCTTCAGATCTAATTCAGGTACAATCTTCTTCTTGGTACAATGATGAGAAATATTTCCTGAAAGTATGTAGTTAG 846 45.04 MAPMSLPPGFRFHPTDEELVAYYLDRKINGGTIELEIIPEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKRPVGMKKTLVYYRGRAPHGLRTNWVMHEYRLIDSMCGSTSSLKDSYALCRIFKKTIHVSKNKEEENANVGKESAWGLEEHLSVDDTSGIESSQGREAGDENFEQDCPKFPSDTSSSDITQGTPFETGVTDDLQAQFPSDEANSSANLYSLNVQYYSSDLIQVQSSSWYNDEKYFLKVCS* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23474520 23476369 - Vvi19g1176 Vvi19g1176 782675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1176 281 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Vvi19g1176 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 197 - -
Vvi19g1176 281 MobiDBLite consensus disorder prediction 209 231 - -
Vvi19g1176 281 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vvi19g1176 281 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vvi19g1176 281 MobiDBLite consensus disorder prediction 187 231 - -
Vvi19g1176 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 197 - -
Vvi19g1176 281 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14399 PF02365 NAM 8.30E-40 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1176 - - vvi:100243251 550.051