Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1177 ATGGCAGCGGTAGTGGGAAGTAGGAAGTGGCCTCTGACTGGTGGCCTTCCCTGCAAACTTTCCTTTGCTGCAGATAATGGGCTTGAGAGAATGTATATAGCAGGTTATCAAGATGGATCTGTTCGAATTTGGGATGCCACATACTTAGCCTTGTCACTTGTTTTTGCTTTCAAATATGAGGTGAAAGGTATCGAAGTTGCTGGTGTAGGCGCATCAGTATCAGCATTGGATTTTTGCTCCCTCAACTTAAGCTTAGCCATTGGCAATGAATGTGGTCTAATTCATCTATATAAGCTACTTGGGAGTTCAGATGACACAAATTTGCATTTTGTCATAGAAACTGAACATGAAGTCCACAAGTTGCATCAAGAGAATGAACCTTAA 384 41.93 MAAVVGSRKWPLTGGLPCKLSFAADNGLERMYIAGYQDGSVRIWDATYLALSLVFAFKYEVKGIEVAGVGASVSALDFCSLNLSLAIGNECGLIHLYKLLGSSDDTNLHFVIETEHEVHKLHQENEP* 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23490154 23490538 - Vvi19g1177 Vvi19g1177 782676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1177 127 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 126 - -
Vvi19g1177 127 Gene3D - 8 125 IPR015943 GO:0005515
Vvi19g1177 127 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 6 126 - -
Vvi19g1177 127 SUPERFAMILY WD40 repeat-like 16 100 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1177 K08518 - vvi:100250143 240.736