Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1181 ATGGGGCAGCCATCGGTGCCACCACCTCTAACACCGCCGGCGCCACCGCTGATGGGAGGCGGAGGTGGTGGAGGATGCCAAGTCCGGTGCGCGGGATGCCGCATGATCTTGACGGTGGGAGCCGGGCTGACGGAGTTCGTGTGCCCTACGTGCCAATTGCCGCAGATGTTTGCATGTCCGCAGTGTGGGATTGACCTCGCCGTCGATGTTTCTAAGCTCAAGCAGTTCTTCCCTCCACGCCCTCCTCCCGAGGAAGTGAATGAGGTCTCCGTTACTCTCTTTCTCTGTTTAATTTGTTGCCTTTGGAACTCCCTAACGCGGTGTTTGATTGCCTTGGTTGCCTATAAATCATATAAAATGAAATACAATTTGGAATTATGGTTTAGGGCTATTGAATTTTGCATCTTATGGCATGAACTTCATTGGCAACATTTCACTGATACCTGTCAGGTAGCCATTGAAGTGGAGCGAGAAGAAGATGAAGGTGGTATGGTGGGAGAAACATTTACAGACTATCGCCCTCCCAAACTGTCTATTGGTCCTCCTCACCCGGATCATGTTGTTGAGACGTCTTCTTTATCTGCAGTGCAGCCACCGGAACCCACATATGATCTCAAAATCAAGGATGATCTGGAAAGTTCAAATGCCTTGTCATGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACATCTTCATCACCTTCAGAGTGGTGCTAGAGCAGGATTCTTTATTGGAGATGGGGCTGGTGTGGGTAAAGGTCGAACAATTGCAGGGTTAATATGGGAGAATTGGCACCATGGGATGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCAAGAAGGGACTTGGATGACGTGGGTGCAACATCTGTTGAAGTGCATGCTTTGAATAAGCTGCCTTATTCTAAGCTTGATTCAAAGTCTGTGGGAGTCAGGGAGGGAGTTGTTTTCTTGACCTATAGCAGTCTTATAGCATCTTCCGAAAAGGGTCGCTCTCGTCTGCAGCAACTTGTGCAGTGGTGTGGATCAGGATATGATGGACTTGTTATATTTGATGAGTGCCACAAAGCTAAGAATTTGGTACCTGAAGCTGGAGGGCAGCCAACACGAACAGGAGAGGCAGTTCTTGAACTCCAGGTTTGCTTTTTGGTGGCTGGGGTGACCCCGATAGAAGTTGCAGCGGGTGAGATGGATAAGGAAGAGGGATCATGTCTTGGCTTGGTTTTGAGGGCAAAGGCTCGACTTCCTGATGCTCGTGTCATTTACTGCTCAGCAACTGGTGCCTCTGAACCACGCAACATGGGTTATATGATCCGGCTAGGTCTTTGGGGAGCTGGAACTTGTTTCTCTAATTTTCGGGAGTTTCTAGGTGCTCTAGATAAAGGGGGTGTTGGGGCACTGGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATGTCTGTCGTACACTTAGCTATAAAGGGGCAGAGTTTGAAACTGTTGAAGCACCATTGGAAGGCCAGATGACGGAAATGTATAAAAGAGCAGCAGAGTTTTGGGCAGAGTTGCGGGTGGAGTTGCTATCAGCTAGTGCCTTTCTTACTGATGAGAAGCCTAATTCTAGTCAGGTGTGGCGGGTATACTGGGCAAGCCATCAGCGTTTCTTTAGACACATGTGTATGTCAGCTAAGGTGCCTGCTGCTGTAAGGCTATCTAAGCAAGCTTTGATGGAAAATAAGTGTGTGGTCATTGGCCTCCAGAGTACTGGAGAGGCAAGAACAGAGGAAGCAGTCACCAAATATGGTCTTGAACTTGATGATTTTATCTCGGGACCTCGTGAGCTGTTGTTAAAATTTGTGGAAGAAAATTATCCTTTGCCTGAAAAGCCTGAATCACTCCCAGGAGAGGAAAGTGTAAAGGAGCTTCAAAGAAAGAGGCACTCAGCAACACCTGGTGTTTCCCTTAAAGGGAGAGTTAGAAAAGTCGCCAAATGGAAACCTGCAAGTGATGGTGAAAGTGATGAAGATTTTGAACCTGATTCTGAACATGAATCTACTGAATCTGATGATGAATTTCAGATTTGTGAGATTTGCAATACTGAAGAGGAACGGAAGAAATTGCTCCAATGTTCCTGTTGCGCCCAACTAGTCCACCCATCATGTTTGGTCCCACCTATGATTGAGTTAGTATCTGAGGAATGGTCATGCCACTTGTGCAAGGAAAAAACTGATGAATATCTTCAAGCAAGACATGCCTATGTAGCCGAACTGTTGAAGAGGTATGAAGCAGCCATGGAGCGTAAGTCTAAGATTTTGGAGATAATTCGTTCTTTGGATCTTCCAAACAACCCCTTGGATGATATTATTGACCAGCTTGGAGGTCCAGATAATGTTGCAGAAATGACAGGGAGGCGAGGCATGCTTGTGAGGGCCTCAACTGGAAAAGGTGTTACTTATCAGGCACGAAACACAAAGGAGGTGACTATGGAAATGGTCAATATGAATGAGAAGCAACTCTTCATGGATGGTAAAAAGTTTGTTGCTATCATATCCGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGAAGAGCAGTAAATCAGAGAAGAAGGGTTCATTTGACTCTAGAGCTTCCCTGGAGTGCTGACCGAGCAATTCAACAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCTGCACCTGAATACAGGCTACTCTTTACCAATTTAGGTGGTGAACGCCGCTTTGCTTCTATTGTTGCAAAGAGATTAGAAACCTTAGGGGCCTTAACACAAGGAGATCGCCGGGCAGGTCCATCATTGAGTGCTTACAACTATGATAGTGCCTATGGAAAAAGGGCCCTGATGGCGATGTATAGAGGAATCATGGAGCAGGATTCTCTGCCAGTTGTACCTCCAGGATGTTCATCTGAAAAACCAGAGACAATCCAAGAGTTTATTATGAAGGCAAAAGCTGCTCTAGTGTCTGTAGGAATAGTTAGAGACTCAGTTCTAGGTAACGGGAAGGATTCTGGAAAGTTGTCTGGCCGTATAGTTGATTCAGACATGCATGATGTTGGACGTTTTCTCAATCGACTCTTAGGATTGCCACCTGATATCCAGAATAGGCTCTTTGAGTTATTCGTCAGCATCCTTGATCTTCTAGTTCAGAATGCACGTACTGAAGGGCATTTTGACTCGGGGATTGTTGACATGAAAGCTAATGTTATTGAACTACAAGGAACACCAAAGACTGTTCATATTGATCCAATGTCTGGGGCATCTACTGTAATGTTTACTTTCACTATGGATCGTGGAATCACATGGGAGTCTGCAACTACTTTGCTTGATGAGAAGCAAAAAGATGGACTTGGTTCAGCCAGTGATGGATTTTATGAATCTAAGAGGGAATGGTTGGGAAGACGACACTTTCTTTTAGCATTTGAAGGTTCTGCTTCTGGAATGTTTAAGATGGTTCGTCCTGCGGTTGGGGAGGCACTAAGGGAAATGCCTCTAGCAGAACTTAAAAGCAAGTACAGAAGAGTTTCTTCCTTGGAGAAGGCTCGTAGTGGTTGGGAAAATGAATATGAAGTTTCATCTAAACAGTGCATGCATGGCCCCAATTGTAAGCTTGGTAACTTCTGTACGGTTGGTAGAAGGCTACAGGAAGTAAATGTTTTGGGTGGCCTCATTCTTCCGATTTGGGGAACTATTGAGAAGGCACTTTCTAAGCAGGCCCGCCAAAGCCATAAACGCCTCCGAGTCGTGCGTATAGAGACCACCACAGATAACCAGCGAATTGTAGGGCTTCTTGTCCCCAATGCAGCGGTTGAATCCGTCCTTCAAGATCTGGCATGGGTTCAAGATCTCGATCCTTGA 3885 45.79 MGQPSVPPPLTPPAPPLMGGGGGGGCQVRCAGCRMILTVGAGLTEFVCPTCQLPQMFACPQCGIDLAVDVSKLKQFFPPRPPPEEVNEVSVTLFLCLICCLWNSLTRCLIALVAYKSYKMKYNLELWFRAIEFCILWHELHWQHFTDTCQVAIEVEREEDEGGMVGETFTDYRPPKLSIGPPHPDHVVETSSLSAVQPPEPTYDLKIKDDLESSNALSCLQIETLVYACQRHLHHLQSGARAGFFIGDGAGVGKGRTIAGLIWENWHHGMRKALWISVGSDLKFDARRDLDDVGATSVEVHALNKLPYSKLDSKSVGVREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGGQPTRTGEAVLELQVCFLVAGVTPIEVAAGEMDKEEGSCLGLVLRAKARLPDARVIYCSATGASEPRNMGYMIRLGLWGAGTCFSNFREFLGALDKGGVGALELVAMDMKARGMYVCRTLSYKGAEFETVEAPLEGQMTEMYKRAAEFWAELRVELLSASAFLTDEKPNSSQVWRVYWASHQRFFRHMCMSAKVPAAVRLSKQALMENKCVVIGLQSTGEARTEEAVTKYGLELDDFISGPRELLLKFVEENYPLPEKPESLPGEESVKELQRKRHSATPGVSLKGRVRKVAKWKPASDGESDEDFEPDSEHESTESDDEFQICEICNTEEERKKLLQCSCCAQLVHPSCLVPPMIELVSEEWSCHLCKEKTDEYLQARHAYVAELLKRYEAAMERKSKILEIIRSLDLPNNPLDDIIDQLGGPDNVAEMTGRRGMLVRASTGKGVTYQARNTKEVTMEMVNMNEKQLFMDGKKFVAIISEAGSAGVSLQADRRAVNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLETLGALTQGDRRAGPSLSAYNYDSAYGKRALMAMYRGIMEQDSLPVVPPGCSSEKPETIQEFIMKAKAALVSVGIVRDSVLGNGKDSGKLSGRIVDSDMHDVGRFLNRLLGLPPDIQNRLFELFVSILDLLVQNARTEGHFDSGIVDMKANVIELQGTPKTVHIDPMSGASTVMFTFTMDRGITWESATTLLDEKQKDGLGSASDGFYESKREWLGRRHFLLAFEGSASGMFKMVRPAVGEALREMPLAELKSKYRRVSSLEKARSGWENEYEVSSKQCMHGPNCKLGNFCTVGRRLQEVNVLGGLILPIWGTIEKALSKQARQSHKRLRVVRIETTTDNQRIVGLLVPNAAVESVLQDLAWVQDLDP* 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23555076 23625967 + Vvi19g1181 Vvi19g1181 782680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1181 1294 MobiDBLite consensus disorder prediction 628 652 - -
Vvi19g1181 1294 Pfam C-terminal domain on Strawberry notch homologue 784 1073 IPR026937 -
Vvi19g1181 1294 Pfam P-loop containing NTP hydrolase pore-1 182 515 IPR039187 -
Vvi19g1181 1294 ProSitePatterns Zinc finger PHD-type signature. 696 740 IPR019786 -
Vvi19g1181 1294 PANTHER STRAWBERRY NOTCH-RELATED 56 387 IPR026741 GO:0006355
Vvi19g1181 1294 PANTHER STRAWBERRY NOTCH-RELATED 415 1293 IPR026741 GO:0006355
Vvi19g1181 1294 PANTHER STRAWBERRY NOTCH-RELATED 26 55 IPR026741 GO:0006355
Vvi19g1181 1294 PANTHER OS08G0223700 PROTEIN 56 387 - -
Vvi19g1181 1294 PANTHER OS08G0223700 PROTEIN 415 1293 - -
Vvi19g1181 1294 PANTHER OS08G0223700 PROTEIN 26 55 - -
Vvi19g1181 1294 SUPERFAMILY FYVE/PHD zinc finger 684 747 IPR011011 -
Vvi19g1181 1294 MobiDBLite consensus disorder prediction 674 689 - -
Vvi19g1181 1294 MobiDBLite consensus disorder prediction 665 689 - -
Vvi19g1181 1294 Gene3D - 214 398 IPR027417 -
Vvi19g1181 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 944 IPR027417 -
Vvi19g1181 1294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 754 IPR013083 -
Vvi19g1181 1294 Pfam PHD-finger 695 743 IPR019787 -
Vvi19g1181 1294 MobiDBLite consensus disorder prediction 634 648 - -
Vvi19g1181 1294 ProSiteProfiles Zinc finger PHD-type profile. 693 743 IPR019787 -
Vvi19g1181 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 458 IPR027417 -
Vvi19g1181 1294 SMART PHD_3 695 741 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1181 - - - vvi:100267281 2236.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14400 PF13872 AAA_34 2.50E-126 CL0023 Vvi TR