Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1182 ATGGGGAAGAAGGCAGTGTTGATAGGATGCAATTACCAGGGAACCAAGGCTGAGCTCAAGGGCTGCATCAACGATGTCAACCGAATGTACAACTCCCTCGTCAATCGCTTCGGCTTCTCCCAGGACGACATCACCGTCCTCATCGACACCGATCCCGATGGCGTTCAGCCTACCGGCAAGAACATTCGCCGCGCCCTGCTTAATCTCATCCGATCTGCCCAGCCCGGCGACATCCTCTTCGTCCACTACAGCGGCCACGGCACTCGACTCCCTGCCGAGACCGGAGAGGACGACGACACCGGCTACGACGAGTGCATCGTCCCTACTGACATGAATCTTATTACCGATGACGATTTCAGGTCTTTTGTGGACAAGGTTCCGGAGGGTTGCCGCATTACGATAGTGTCGGATTCGTGCCACAGCGGTGGCCTGATCGATGAGGCTAAAGAGCAGATCGGGGAGAGCACCAGGCTGCAACAAGAGCAAGAATCGGGATCTGGATTCGGATTCAAAAGCTTCCTGCACCAAACCGAGGATGTGGATGAGGGAGGAGTGGATGCGGAGTACGGAGATCGCGGCTATGTGAAGAGCAGATCTCTGCCGCTTTCAACTCTTATCGAGATACTCAAGCAGAAAACTGGTAAAGATGACATTGATGTCGGGAAACTGAGGCCAACGCTTTTTGATGTTTTCGGTGAAGATGCGAGTCCCAAGGTGAAGAAGTTCATGAATGTTGTTATGAACAAGCTCCAACAAGGCGGCGAGGAAAACAACGAAGACTACGCGAAACCTGCGTTGGAGACAGAAGTGGGAAGCAAGCAAGAGGTTTATGCAGGGTCCGGGAAGAGGGCACTGCCAGATAATGGGATTCTGATCAGCGGCTGCCAGACTGACCAGACATCCGCGGATGCCAGCCCATCTGGAAACTCTGCTGAAGCTTATGGGGCTCTGAGCAACGCCATTCAAACCATAATTGAAGAATCGGACGGAAGTATTCGGAACCAGGAGCTTGTTTTGAAGGCCAGGGAGACGCTGAAGCGCCAGGGCTTCACTCAGCGCCCTGGACTCTACTGCAGCGATCACCATGCTGATGCTCCATTCATCTGCGACATTTAA 1116 53.49 MGKKAVLIGCNYQGTKAELKGCINDVNRMYNSLVNRFGFSQDDITVLIDTDPDGVQPTGKNIRRALLNLIRSAQPGDILFVHYSGHGTRLPAETGEDDDTGYDECIVPTDMNLITDDDFRSFVDKVPEGCRITIVSDSCHSGGLIDEAKEQIGESTRLQQEQESGSGFGFKSFLHQTEDVDEGGVDAEYGDRGYVKSRSLPLSTLIEILKQKTGKDDIDVGKLRPTLFDVFGEDASPKVKKFMNVVMNKLQQGGEENNEDYAKPALETEVGSKQEVYAGSGKRALPDNGILISGCQTDQTSADASPSGNSAEAYGALSNAIQTIIEESDGSIRNQELVLKARETLKRQGFTQRPGLYCSDHHADAPFICDI* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23626247 23627989 - Vvi19g1182 Vvi19g1182 782681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1182 371 PANTHER METACASPASE-4 253 369 - -
Vvi19g1182 371 PANTHER METACASPASE-4 187 246 - -
Vvi19g1182 371 PANTHER METACASPASE-4 1 162 - -
Vvi19g1182 371 SUPERFAMILY Caspase-like 5 119 IPR029030 -
Vvi19g1182 371 PANTHER METACASPASE-5 253 369 - -
Vvi19g1182 371 PANTHER METACASPASE-5 187 246 - -
Vvi19g1182 371 PANTHER METACASPASE-5 1 162 - -
Vvi19g1182 371 Gene3D - 1 185 - -
Vvi19g1182 371 Gene3D - 259 368 - -
Vvi19g1182 371 Pfam Caspase domain 3 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1182 - - - vvi:100241522 707.212
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1182 Blo04g00453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00927 . Bma03g00487 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006948 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37