Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1184 ATGAACCCCTTGGATTTTACCGAAAACGATGCTTCTGGACTCCAACCTTATGAGCAATTTGAGCGTCTAGAATACGAAGCTTTGGCTGAGAAAAAGAGAAAAGCACTTTCACAATGCCAATTTGAAGGGTTGGCAAAGAAGGCCAGGCATGAAGATGATTCTCAGGCAATATTTGATGAAATAATGGAAACAATGAACCATCGCCGTCGAAGAAAGTCAAGGAAGCGTAAGAAATCAGGTAGACGAAAGGGATTGAAGAATAAACTTAGCCCTGAAGTCACAAGAAAGCTGGGTGAAGCTAATCTTCATTATGCTCATGGTCGTTATGAAGAGGCTATACTTGTTTTGAAAGAAGTGGTTCGGTTGGCTCCAAATTTACCTGATGCATATCACACATTTGGACTTGTCTATAATGCATTTGGAGATAAAAAAAGGGCCTTGAACTTCTACATGCTTGCTGCACATTTGACACCAAAAGATTCATCCCTCTGGAAACTGCTTGTTACCTGGTCCATAGAGCAAGGAAATACTGGTCAAGCTAGGTACTGCCTTTCAAAAGCAATAACAGCAGATCCTGAAGATATATCACTCAGGTTCCATCGTGCCTCACTCTATGTTGAGCTTGGAGAGTATCAGAAAGCTGCTGAGTCATATGAACAAATATCACAACTCTTTCCTGAGAATGTTGAAGCACCAAAGACAGGGGCAAAGCTTTACAAAAAATGTGGTCAGGTTGAACGTTCTGTCAGCATTCTGGAGGACTATATTAAAGATCATCCAACTAAAGCTGATTTAAGCATTGTTGATATGCTAGCTGCTGTATGCATGGAAAATAATGTGCATGATAGAGCTCTTCAGCACATTGAGCATGCACAATTGCTTTACTGTTCTGGGAAAGACTTGCCACTGCATCTAACAATCAAAGCAGGAATTTGCCACATTCATCTTGGAAATATTGAAAAGGCAGAGGCTCTCTTCAGTGTTTTGCAACGGGAAACATGTGATCATGCTGGCTTAATTTCTGAAGTTGCAGACTCATTTATGAGTCTTGAGCTTTATGATTTTGCATTGAAGTATTATCTGATGTTGGAGGGAAATGTTGGACGTGACAATGGCTTTTTACACCTCAAAATTGCTCAATGTTACTTATCCTTGAAAGAGAGAGTTCAAGCAATTCCTTTCTTCTATAAAGAAAATCAGGAAGCTGATAGGTTGGCCAAAAGAGGAGCTTCTATCCCCATCAAGTGTAGTGAGGACTTCTTTTTCTCCCTTGGTAGTCCTTGCAAACTTATGATTGTTATTCTTTTCCTAGTCTCTATATTCTTCTATACATTAGATGTGCTTCAGGACAATATTGACGCCCGGTTAACTTTGGCTACCCTTCTCCTTGAAGGAGCTAAAGAAGATGAAGCCATTTTGTTGCTATCTCCTCCAAAAAATTTAGAGTCTACAGTGGATCCAAATTCTGATGAATTTCAGCCATGGTGGCTTAATGGAAAAGTGAAATTGAAGCTTTCCCATATTTATAGATCTAAAGGGATGTCTGATGAATTTGTCGATGCAATATTCCCCTTAGTTCGAGAGTCATTGTTCGTTGAAACATTAAAGCAGAAGGTAACAGTGAGAGTAAAGAAAAGGCTTTCAAAAAGTGTTCTTTTTGAAAGAGTCAAAGTTCTGGATGATCATCACAGTGATAATGTATTTCATGGATTTAGACCAATGGCCTCTACATCTGATTTGTCGAAAGCTTCCAGAGCAAAAAAATTGCTTCAAAAGAAGGCTACACGAAAGGAGGAAAGGAAAGCTGCAGCAATGGCTGCTGGAGTGGATTGGTATAGTGATGAGTCAGATGATGAGTCTCCGGAACAAAAATTGAGAGAGCCTCCTCTCCCTAATCTTCTCAAAGATGAAGAGCATCATCATCTCATCCTAGATTTGTGCAAGGCATTGGCATCCTTGCGGAAGTATTGGGAAGCATTAGATATTATTAATCTAACTCTGAGGTTGGCATACAACATAATGCCCATTGAGAAGAAGGAGGAGCTTCGATCTCTTGGAGCTCAAATAGCATACAACATCACAGATCCTAAGCATGGGTTTGATTATGTAAAGTACATTGTTCAGCAGCATCCACACAGCCTTGCTGCCTGGAATTGCTATTACAAAGTAATTTCAAGATTGGAAAATCGATATTCAAAGCATTCTAAACTTCTACATAGTATGCGAGTCAGACACAAAGACTGTGTACCACCAATTGTAATTTTCGGGCATCAATTTACCATGATCAGCCAGCATCAAATCGCAGCGAAAGAATACTTAGAAGCTTATAAACTAATGCCAGAGAACCCCCTCATAAATCTCTGTGCTGGAACTGCCTTAATCAACATAGCCCTTGGGTTTAGACTTCAAAACAAGCATCAATGTCTTGCGCAAGGCTTAGCATTCCTCTACAACAATTTGCGGCTTTGTGAAAATAGCCAGGAAGCCTTGTACAATATTGCCCGGGCATATCATCATGTTGGCCTTGTTTCTCTGGCAGTTACATATTATGAAAAGGTTCTTGCAACTCATGAGAGAGATTACCCGATCCCCAGGCTTCCATATGAGAATACAGACCTTGTGGAAAATAGGAAGCCCGGTTACTGTGATCTTCGCAGAGAAGCAGCATATAATTTGCACTTAATTTACAAAAAAAGTGGAGCACTTGATCTTGCTAGACAGGTCTTAAAAGACCACTGCACTATATGA 2748 40.1 MNPLDFTENDASGLQPYEQFERLEYEALAEKKRKALSQCQFEGLAKKARHEDDSQAIFDEIMETMNHRRRRKSRKRKKSGRRKGLKNKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKRALNFYMLAAHLTPKDSSLWKLLVTWSIEQGNTGQARYCLSKAITADPEDISLRFHRASLYVELGEYQKAAESYEQISQLFPENVEAPKTGAKLYKKCGQVERSVSILEDYIKDHPTKADLSIVDMLAAVCMENNVHDRALQHIEHAQLLYCSGKDLPLHLTIKAGICHIHLGNIEKAEALFSVLQRETCDHAGLISEVADSFMSLELYDFALKYYLMLEGNVGRDNGFLHLKIAQCYLSLKERVQAIPFFYKENQEADRLAKRGASIPIKCSEDFFFSLGSPCKLMIVILFLVSIFFYTLDVLQDNIDARLTLATLLLEGAKEDEAILLLSPPKNLESTVDPNSDEFQPWWLNGKVKLKLSHIYRSKGMSDEFVDAIFPLVRESLFVETLKQKVTVRVKKRLSKSVLFERVKVLDDHHSDNVFHGFRPMASTSDLSKASRAKKLLQKKATRKEERKAAAMAAGVDWYSDESDDESPEQKLREPPLPNLLKDEEHHHLILDLCKALASLRKYWEALDIINLTLRLAYNIMPIEKKEELRSLGAQIAYNITDPKHGFDYVKYIVQQHPHSLAAWNCYYKVISRLENRYSKHSKLLHSMRVRHKDCVPPIVIFGHQFTMISQHQIAAKEYLEAYKLMPENPLINLCAGTALINIALGFRLQNKHQCLAQGLAFLYNNLRLCENSQEALYNIARAYHHVGLVSLAVTYYEKVLATHERDYPIPRLPYENTDLVENRKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTI* 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23634532 23683391 + Vvi19g1184 Vvi19g1184 782683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1184 915 MobiDBLite consensus disorder prediction 68 84 - -
Vvi19g1184 915 Coils Coil 580 600 - -
Vvi19g1184 915 Pfam Tetratricopeptide repeat 198 228 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 161 194 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 93 126 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 127 160 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 195 228 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 827 860 IPR019734 GO:0005515
Vvi19g1184 915 Pfam TPR repeat 101 137 - -
Vvi19g1184 915 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515
Vvi19g1184 915 Pfam Tetratricopeptide repeat 829 861 IPR019734 GO:0005515
Vvi19g1184 915 MobiDBLite consensus disorder prediction 63 92 - -
Vvi19g1184 915 Gene3D Tetratricopeptide repeat domain 568 913 IPR011990 GO:0005515
Vvi19g1184 915 SUPERFAMILY TPR-like 99 262 IPR011990 GO:0005515
Vvi19g1184 915 Gene3D Tetratricopeptide repeat domain 8 304 IPR011990 GO:0005515
Vvi19g1184 915 Gene3D Tetratricopeptide repeat domain 305 410 IPR011990 GO:0005515
Vvi19g1184 915 SUPERFAMILY TPR-like 754 910 IPR011990 GO:0005515
Vvi19g1184 915 SUPERFAMILY TPR-like 271 397 IPR011990 GO:0005515
Vvi19g1184 915 MobiDBLite consensus disorder prediction 611 630 - -
Vvi19g1184 915 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 4 915 IPR039340 GO:0006383
Vvi19g1184 915 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1184 K15201 - vvi:100257006 1679.07