Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1184 ATGAACCCCTTGGATTTTACCGAAAACGATGCTTCTGGACTCCAACCTTATGAGCAATTTGAGCGTCTAGAATACGAAGCTTTGGCTGAGAAAAAGAGAAAAGCACTTTCACAATGCCAATTTGAAGGGTTGGCAAAGAAGGCCAGGCATGAAGATGATTCTCAGGCAATATTTGATGAAATAATGGAAACAATGAACCATCGCCGTCGAAGAAAGTCAAGGAAGCGTAAGAAATCAGGTAGACGAAAGGGATTGAAGAATAAACTTAGCCCTGAAGTCACAAGAAAGCTGGGTGAAGCTAATCTTCATTATGCTCATGGTCGTTATGAAGAGGCTATACTTGTTTTGAAAGAAGTGGTTCGGTTGGCTCCAAATTTACCTGATGCATATCACACATTTGGACTTGTCTATAATGCATTTGGAGATAAAAAAAGGGCCTTGAACTTCTACATGCTTGCTGCACATTTGACACCAAAAGATTCATCCCTCTGGAAACTGCTTGTTACCTGGTCCATAGAGCAAGGAAATACTGGTCAAGCTAGGTACTGCCTTTCAAAAGCAATAACAGCAGATCCTGAAGATATATCACTCAGGTTCCATCGTGCCTCACTCTATGTTGAGCTTGGAGAGTATCAGAAAGCTGCTGAGTCATATGAACAAATATCACAACTCTTTCCTGAGAATGTTGAAGCACCAAAGACAGGGGCAAAGCTTTACAAAAAATGTGGTCAGGTTGAACGTTCTGTCAGCATTCTGGAGGACTATATTAAAGATCATCCAACTAAAGCTGATTTAAGCATTGTTGATATGCTAGCTGCTGTATGCATGGAAAATAATGTGCATGATAGAGCTCTTCAGCACATTGAGCATGCACAATTGCTTTACTGTTCTGGGAAAGACTTGCCACTGCATCTAACAATCAAAGCAGGAATTTGCCACATTCATCTTGGAAATATTGAAAAGGCAGAGGCTCTCTTCAGTGTTTTGCAACGGGAAACATGTGATCATGCTGGCTTAATTTCTGAAGTTGCAGACTCATTTATGAGTCTTGAGCTTTATGATTTTGCATTGAAGTATTATCTGATGTTGGAGGGAAATGTTGGACGTGACAATGGCTTTTTACACCTCAAAATTGCTCAATGTTACTTATCCTTGAAAGAGAGAGTTCAAGCAATTCCTTTCTTCTATAAAGAAAATCAGGAAGCTGATAGGTTGGCCAAAAGAGGAGCTTCTATCCCCATCAAGTGTAGTGAGGACTTCTTTTTCTCCCTTGGTAGTCCTTGCAAACTTATGATTGTTATTCTTTTCCTAGTCTCTATATTCTTCTATACATTAGATGTGCTTCAGGACAATATTGACGCCCGGTTAACTTTGGCTACCCTTCTCCTTGAAGGAGCTAAAGAAGATGAAGCCATTTTGTTGCTATCTCCTCCAAAAAATTTAGAGTCTACAGTGGATCCAAATTCTGATGAATTTCAGCCATGGTGGCTTAATGGAAAAGTGAAATTGAAGCTTTCCCATATTTATAGATCTAAAGGGATGTCTGATGAATTTGTCGATGCAATATTCCCCTTAGTTCGAGAGTCATTGTTCGTTGAAACATTAAAGCAGAAGGTAACAGTGAGAGTAAAGAAAAGGCTTTCAAAAAGTGTTCTTTTTGAAAGAGTCAAAGTTCTGGATGATCATCACAGTGATAATGTATTTCATGGATTTAGACCAATGGCCTCTACATCTGATTTGTCGAAAGCTTCCAGAGCAAAAAAATTGCTTCAAAAGAAGGCTACACGAAAGGAGGAAAGGAAAGCTGCAGCAATGGCTGCTGGAGTGGATTGGTATAGTGATGAGTCAGATGATGAGTCTCCGGAACAAAAATTGAGAGAGCCTCCTCTCCCTAATCTTCTCAAAGATGAAGAGCATCATCATCTCATCCTAGATTTGTGCAAGGCATTGGCATCCTTGCGGAAGTATTGGGAAGCATTAGATATTATTAATCTAACTCTGAGGTTGGCATACAACATAATGCCCATTGAGAAGAAGGAGGAGCTTCGATCTCTTGGAGCTCAAATAGCATACAACATCACAGATCCTAAGCATGGGTTTGATTATGTAAAGTACATTGTTCAGCAGCATCCACACAGCCTTGCTGCCTGGAATTGCTATTACAAAGTAATTTCAAGATTGGAAAATCGATATTCAAAGCATTCTAAACTTCTACATAGTATGCGAGTCAGACACAAAGACTGTGTACCACCAATTGTAATTTTCGGGCATCAATTTACCATGATCAGCCAGCATCAAATCGCAGCGAAAGAATACTTAGAAGCTTATAAACTAATGCCAGAGAACCCCCTCATAAATCTCTGTGCTGGAACTGCCTTAATCAACATAGCCCTTGGGTTTAGACTTCAAAACAAGCATCAATGTCTTGCGCAAGGCTTAGCATTCCTCTACAACAATTTGCGGCTTTGTGAAAATAGCCAGGAAGCCTTGTACAATATTGCCCGGGCATATCATCATGTTGGCCTTGTTTCTCTGGCAGTTACATATTATGAAAAGGTTCTTGCAACTCATGAGAGAGATTACCCGATCCCCAGGCTTCCATATGAGAATACAGACCTTGTGGAAAATAGGAAGCCCGGTTACTGTGATCTTCGCAGAGAAGCAGCATATAATTTGCACTTAATTTACAAAAAAAGTGGAGCACTTGATCTTGCTAGACAGGTCTTAAAAGACCACTGCACTATATGA 2748 40.1 MNPLDFTENDASGLQPYEQFERLEYEALAEKKRKALSQCQFEGLAKKARHEDDSQAIFDEIMETMNHRRRRKSRKRKKSGRRKGLKNKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKRALNFYMLAAHLTPKDSSLWKLLVTWSIEQGNTGQARYCLSKAITADPEDISLRFHRASLYVELGEYQKAAESYEQISQLFPENVEAPKTGAKLYKKCGQVERSVSILEDYIKDHPTKADLSIVDMLAAVCMENNVHDRALQHIEHAQLLYCSGKDLPLHLTIKAGICHIHLGNIEKAEALFSVLQRETCDHAGLISEVADSFMSLELYDFALKYYLMLEGNVGRDNGFLHLKIAQCYLSLKERVQAIPFFYKENQEADRLAKRGASIPIKCSEDFFFSLGSPCKLMIVILFLVSIFFYTLDVLQDNIDARLTLATLLLEGAKEDEAILLLSPPKNLESTVDPNSDEFQPWWLNGKVKLKLSHIYRSKGMSDEFVDAIFPLVRESLFVETLKQKVTVRVKKRLSKSVLFERVKVLDDHHSDNVFHGFRPMASTSDLSKASRAKKLLQKKATRKEERKAAAMAAGVDWYSDESDDESPEQKLREPPLPNLLKDEEHHHLILDLCKALASLRKYWEALDIINLTLRLAYNIMPIEKKEELRSLGAQIAYNITDPKHGFDYVKYIVQQHPHSLAAWNCYYKVISRLENRYSKHSKLLHSMRVRHKDCVPPIVIFGHQFTMISQHQIAAKEYLEAYKLMPENPLINLCAGTALINIALGFRLQNKHQCLAQGLAFLYNNLRLCENSQEALYNIARAYHHVGLVSLAVTYYEKVLATHERDYPIPRLPYENTDLVENRKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTI* 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23634532 23683391 + Vvi19g1184 Vvi19g1184 782683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1184 915 MobiDBLite consensus disorder prediction 68 84 - -
Vvi19g1184 915 Coils Coil 580 600 - -
Vvi19g1184 915 Pfam Tetratricopeptide repeat 198 228 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 161 194 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 93 126 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 127 160 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 195 228 IPR019734 GO:0005515
Vvi19g1184 915 SMART tpr_5 827 860 IPR019734 GO:0005515
Vvi19g1184 915 Pfam TPR repeat 101 137 - -
Vvi19g1184 915 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515
Vvi19g1184 915 Pfam Tetratricopeptide repeat 829 861 IPR019734 GO:0005515
Vvi19g1184 915 MobiDBLite consensus disorder prediction 63 92 - -
Vvi19g1184 915 Gene3D Tetratricopeptide repeat domain 568 913 IPR011990 GO:0005515
Vvi19g1184 915 SUPERFAMILY TPR-like 99 262 IPR011990 GO:0005515
Vvi19g1184 915 Gene3D Tetratricopeptide repeat domain 8 304 IPR011990 GO:0005515
Vvi19g1184 915 Gene3D Tetratricopeptide repeat domain 305 410 IPR011990 GO:0005515
Vvi19g1184 915 SUPERFAMILY TPR-like 754 910 IPR011990 GO:0005515
Vvi19g1184 915 SUPERFAMILY TPR-like 271 397 IPR011990 GO:0005515
Vvi19g1184 915 MobiDBLite consensus disorder prediction 611 630 - -
Vvi19g1184 915 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 4 915 IPR039340 GO:0006383
Vvi19g1184 915 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1184 K15201 GTP3C3, TFC4; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) - vvi:100257006 1679.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .