Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1185 ATGCCGCTCTTCATTTCCGACGAAGAGTACTCCCGGTGCTCAAACGACGTCGCTTTGGTCGCCGAGAAGGCGGATTCCTTCATCAGAGACCTCTACAACGAGCTCCAGACCGTCAAAGCTCAGGCCGATGCCGCCTCCATCACCGCCGAGCAGACTTGCTCTCTTCTTGAGCAGAAGTACATCTCTCTCTCCCAAGAATTCTCCAAACTCGAATCTCAAAACGCCCAACTCAACTCCTCTCTTCAAGAACGACTCTCAGAGCTCGCCCAAATCCAAGCTGAAAAGCACCAGCTCCACCTCAAATCCATTGAGAAAGATGGAGAGATTGAGCGGTTGTCTACTGAGGAGTCGGAGCTTCATAAATCGAAAAGGCAGTTGCTTGAGTTTTTGGAGCACAAGGATTTGGAGATTAGTGAGAAAAATGCTACAATCAAAAGTTACTTGGATAAGATTGTTAACATGACAGACACTGCTGCTCTAAGGGAGGCTCGACTGAGTGATGCCGAGGCAGAGTTGTCACGTTCTAAGGCTGCATGTGCACGTCTTTTACAGGAGAAAGAACTTATTGAAAGGCATAATGTTTGGCTTAATGACGAGTTAACATCTAAAGTTAAGAGTCTCACTGAGCTACGAAGAACACATGTTGAACTTGAGGCAGACATGTCTACTAAGCATTCAGATGTTGAGAGACGATTGAATGAATGCTCTAGCTCTTTGAAATGGAATAAAGAAAGAGTGAAAGAGCTAGAAATGAAGTTGACATCAATGCAACAGGAGTTGTGCTCATCAAAAGATGCTGCTGCAGCCAATGAACAGAGGCTTTCTGCTGAAATCATGACTGTAAACAAACTTGTTGAACTGTACAAAGAGAGTTCAGAGGAATGGTCCAGAAAGGCAGGAGAGCTTGAGGGTGTGATCAAAGCTTTGGAAACACATTTGATTCAAGTTGAAAATGACTATAAAGAGAGACTTGAAAAGGAAGTATTTGCCAGAAAGGAACTCGAAAAGGAGGCAGCAGATTTGAAAGGGAAACTCGAAAAGTGTGAGGCTGAGATGGAAACTAGTAGAAGAGCAAATGAGCTAAATCTTCTTCCACTCAGCAGTTTAATTACTGGAACCACATGGTTGGATTCTTTTCAAACCAATGACATGGTTGAAGATAACTGCATGCTTGTCCCCAAGATTCCAGCGGGTGTTTCAGGGACTGCATTAGCAGCTTCGCTTCTGCGCGATGGCTGGAGTCTGGCTAAGATGTATAGCAAATATCAAGAGGCTGTTGATGCCTTGCGACATGAGCAATTAGGAAGGAAGCACTCTGAAGCAATGTTGGAACAGGTCCTGCATGAAATAGAGGAGAAAGCTGTAGTCATTTTGGATGAGAGAGCGGAACATGAGAGAATGGTTGAAGGATACTCTGCAATCAACCAAAAACTGCAGCAATCTCTTTCTGAGCAGTCGAATTTGGACAAAACAATCCAGGAACTTAAGGCTGACTTGAGGCAGCAAGGACGTGACTACGCTGTGGCTCAGAAAGAGATTGTTGACCTGGAGAAACAGGTGACGGTGCTTTTAAAGGAATGCCGAGATATACAGCTTCGTTGTGGATTGGTGGGTCATGATTTCGCTGATAACGGTACAATTACTGCTGCTGATGAGATGAATGCAGAGTCTAATTCTGACGAAGTAATTTCAGAACGGCTTTTGACTTTTAGGGATATAAATGGATTAGTTGAGCAGAATGTCCAGCTCCGAAGCCTTGTACGCAGCCTTTCTGACCAACTTGAGGATAAAGATATGGAGTTGAAGGAGAAGTTTGAACTGGAGCTCAAAAAGCATACTGATCAGGCTGCCTCTAAAGTTGCAGCAGTGTTAGAAAGAGCTGAAGAGCAAGGGCGCATGATTGAATCACTTCACACCTCTGTTGCAATGTACAAACGGTTGTATGAGGAGGAACATAAACTTCATTCATCTTTCCCCCATTCTGCAGAAGCAGCTCCAGAAAATGGAAGGAAGGACCTCATGCTTCTTCTTGAAGGTTCTCAGGAAGCTACGAAAAAGGCCCAAGAACAAGCTGCTGAACGTGTCAGATCTCTTCAAGAGGATTTGGCGAAGTCTAGGAGTGAGATCATATCATTGCGATCAGAGCGTGACAAATTTGCTTTGGAAGCAAATTTTGCACGAGAGAGACTTGAAAGCTTTATGAAAGAATTTGAACATCAGAGAGATGAAGCTAATGGCATCCTAGCAAGAAATGTGGAATTCTCTCAGCTAATAGTTAATTACCAACGAAAGATACGTGAAAGTTCTGAATCTTTGCATACCGTCGAGGAACTTTCTCGAAAGCTAACTATGGAGGTGTCTTTTTTGAAGCATGAAAAAGAAATGTTGTCAAATTCTGAAAAAAGAGCTTCTGATGAAGTTCGTAGTTTGTCTGAGAGGGTCCACCGTCTGCAGGCGACTTTGGACACTATCCATAGCACTGAGGAATTTCGTGAGGAGGCTAGAACTGTGGAGAGGAGAAAACAAGAGGAGCATATAAGACAGATTGAGAGGGAATGGGCTGAGGCAAAGAAAGAGCTACAAGAAGAACGTGATAATGTTCGGACGCTCACACTTGACAGGGAACAGACTATAAAAAATGCCATGAGACAAGTTGAAGAAATGGGAAAAGAACTTGCTAAGGCCTTGCAAGCGGTTGCAGCTGCTGAGGCTAGGGCTGCTGTTGCAGAGGCTCGATACTCTGATCTGGAGAAAAAGTTGAAATCTTCTGAAACCAAGGTTGTTGAGATTAATGGTGAATGTGGACCCTCCTCGTCCTCAGCTCATGAGGCTGTTGTGGACTTGCATATTGAGAAAGAAGAGATAGAAAAATTGAAGGAAGAAGCACAGGCTAACAAAGCTCATATGCTACAGTATAAAAGCATAGCAGAGGTGAATGAAGCTGCACTGAAACAGATGGAATATGCTCATGAAAACTTCAGGATTGAGGCAGATAAGCTAAAGAAATCACTGGAAGCAGAGGTTATGTCACTTAGAGAGAGGGTTTCTGAACTTGAAAATGAAGCTATTTTGAAGTCCAAAGAAGCAGCATCTACAGCTGCAGGAAATGAAGAGGCTCTTGCTTCTGCTTTAGCTGAAATTGGTAGTCTAAAGGAAGAAAATTCAATCAAAATGTCCCAAATTGCGGCGATTGAAATTCAAATTTCTGCTTTGAAAGATGATTTGGAGAACGAGCATCGACGTTGGCGTTCTGCACAAGACAATTATGAAAGACAGGTCATCCTACAATCAGAGACAATTCAGGAGTTGACAAAAACATCACAAGCTTTGGCTTTGCTGCAGAAGGAGGCTTCTGAATTGCGTAAACTGGCAGATGCAAAAAATGCTGAAAATAACGAATTAAAGGGGAAGTGGGAAGTGGAGAAGTCAATGTTAGAGGTGGCAAAGAATGAAGCTGAAAAGAAATATGATGAGATTAACGAACAGAACAAGATCCTACATAGTCGGCTAGAGGCTTTGCACATCAAATTGGCTGAAAAGGACCGCAGATCTGTTGGAATATCCTCGAGTAGTGGTTTGGATCCACTTGGTGATGCTGGATTACAGAATGTGATTAATTATCTACGTCGCTCGAAGGAAATAGCAGAAACAGAGATCTCTTTGTTGAAACAGGAAAAGTTGCGATTACAATCCCAACTTGAGAGTGCTTTAAAGGCAACAGAGACAGCCCAAGCATCACTTCATGCTGAGCGTGCAAATTCAAGAACATTGTTGTTCACAGAAGAAGAGATCAAATCCCTACAACTTCAGGTTAGAGAAATGAACTTGCTTCGGGAAAGCAACATGCAAATCAGAGAGGAGAACAAGCATAATTTTGAGGAGTGCCAGAAATTACGTGAAGTAGCTCAAAAAGCTAGGATTGAGACTGAGAATTTGGAGGTTCTACTGAGGGAGAGTCAAACTGAAGTGGAAACTTGTAAGAAAGAAATTGAAATGCAAAGGACGGAAAAAGATCAATTGGAAAAGAGGGTTGGTGAGTTGCTTGAGCAGTCCAAAAATATTGATGTGGAAGATTATGAGCGCATGAAACATGATTTTCATCAGATGCAGATAAATCTAAGAGAGAAGGATGCTCAAATAGAGGAAATGAAGAGACATGTATCTGAGAAGCAGGATAGAATCTCAAAGTTGGAACAAGACATTGCGAACAGCAGGTTGGAACTAAGTGAGAGGGAGAACAAGATAAATGATATTTTGCAAGCTGAGGCCAATATGAAAGCAGAGTTAGAGAAGCAAAAGAAGGTGACAGCTCAATTAAAGAAGAGGTTGGAGGCCTTGTCAAGGGAAAAGGAGGAACTGAGCAAAGAGAATCAAGCTCTTTCCAAACAGTTGGAGGATTACAAACAAGGGAAAAGGTCCATTGGGGATGTTTCAGGTGAACAGGCCATGAAAGAGAAGGAGAAGGAGAAGGAAAAAGATTCCAGGCTACAGACTCTGGAGAAAGCTCTCGAGAGGCAGAGGGAGGAGTATAGGAAGGAGAGGGATGACCATCGAATGGAGAAAGCAAAGCGCCTGAAGACTGAGAAGACAATCGTGGATTCTATTAAGAATGTTAATCAGGAGAAAGCAAAGCTGGTAGATGAACTTGAGAAACATAAGCTGGCTCTTAAGAGGGTCTCAGACGAACTCGAAAAACTCAAGCATGCCAAAGGCAATCTACCTGAGGGTACCTCAGTGGTTCAGCTTCTTTCTGGGCCTCTCTTGGATGATCTTGCTGCTGCCTATGCACTGACTGTAGAAAATTTTGAGAAGTTGGCACATTCAGTTTTTAGTGAGCTTGGAGCTCGTGCTCTGCCGCTAGATCCTTCTTCAACTGTTGATACTTCTTCTTCAGCAGCTACTACTGGTTTAACAGCTCCTGCCCAACCTCCAAGTATCTTGACTCCAGTGGTTCCTGCAACCAGCTATTCACCAGCCAAAGCTGCCGAAGAAAGAGAGAAGAGATTGGCTATTCTTAAAACCAATGCTGAAACGCGTAAAACTGGAAGGAAGTTGGTTCGGCCTCGTCTTGTGAAAAGTGAGGAGCCCCAAGGTGATGTAGATATGGCTGAGATTGAGGGGCCTAACAATGGAGGGAAACCTGCACCTTCTCAGGACACAGAAACTCAAACTCTACCCCCAGTTCGCAAACGTTTAGCTTCTTCATCCACTTCTGATTTACAAGAAGATACTCAGATTCAAGGGGAGACTACCTCAGATGTGGCACCACCTGTGCTAAAGAGATCCAGAGGCTCAGATTCCCCACAAGAGGCTGCTGAAGGACAGGCTGCTGCTTCTTTGGAAAATCTTGAAACTCTTCGGGCCATCGAAGAATCTTTTGATGCCATTGCTGATTTACCTCAAGGCTCCAATGAGGAAGCCATCGATGTTGAGAAAGAAGAGGCAGAGATTTCTGAAGGACAAACTGAGGAGCCAAAGGAACCAGCACAAGTAGATGGCACGAGTGAAGTTGAATTGCCGAATGAGAGAGCCAGTGCTGTGGAAGAGGTTTTGGTTAAGCCAATTGAAAGAGAAGTGGTGTTTGATGATGGACCAAAGGATCAGGCTGAGCAAGACATTCAACCATCAATGATAGAATTGGGAAGTGAAAAGGAAGAGGGAGAGCTGGACCCAGATGTTACGGATATTGAGGGTGGTGGTGACATGTGTAATATAACAGGGGGCACAACAATAGGTGAGGGTCAGCCTGAGACTGTGGTAGTTCCTGTGACTTCACCAGCTGGGGGTGATGAGGAAGGTCTAGTCACTGCAGCAGTGGACATTGGTGATATTAATTCCCCTGAGATTCTAAATGATGAAAAAACAGCCGAAGGTGATGTAATGGAAGAGGTTGCTGAGGGTTCTGATAAGTCGAATGATGGTAATGAGCAGATAGCCGTGGAGACTGACCAAACTCCTGAAGCTGCTATGGGTTCTGAAAGTACTTCGACTAGTACTAGTACTGTTGTAGATGTTGGTGTTTCAAAACAAGGTAGCCCCACCGTACCAGCAGATCCAGAAGAGGTAAAACAGGCATTGCCTGTTGGTAGCAGCTCAACTACCATAAATTTACAGGAGAGGGCTAGACAGAGAGCAATGCTTAGACAGGCTGGAGTTCTTTCTCCTTCAGTTGGTAGAGGCCGTGGAAGGGCAATAACTCGTGGTCGAGGTGTGCGGGGTGGACGGGGACGTGCTGGACGTGGACAATCATCTGGTGATCAAGGTTAA 6267 44.07 MPLFISDEEYSRCSNDVALVAEKADSFIRDLYNELQTVKAQADAASITAEQTCSLLEQKYISLSQEFSKLESQNAQLNSSLQERLSELAQIQAEKHQLHLKSIEKDGEIERLSTEESELHKSKRQLLEFLEHKDLEISEKNATIKSYLDKIVNMTDTAALREARLSDAEAELSRSKAACARLLQEKELIERHNVWLNDELTSKVKSLTELRRTHVELEADMSTKHSDVERRLNECSSSLKWNKERVKELEMKLTSMQQELCSSKDAAAANEQRLSAEIMTVNKLVELYKESSEEWSRKAGELEGVIKALETHLIQVENDYKERLEKEVFARKELEKEAADLKGKLEKCEAEMETSRRANELNLLPLSSLITGTTWLDSFQTNDMVEDNCMLVPKIPAGVSGTALAASLLRDGWSLAKMYSKYQEAVDALRHEQLGRKHSEAMLEQVLHEIEEKAVVILDERAEHERMVEGYSAINQKLQQSLSEQSNLDKTIQELKADLRQQGRDYAVAQKEIVDLEKQVTVLLKECRDIQLRCGLVGHDFADNGTITAADEMNAESNSDEVISERLLTFRDINGLVEQNVQLRSLVRSLSDQLEDKDMELKEKFELELKKHTDQAASKVAAVLERAEEQGRMIESLHTSVAMYKRLYEEEHKLHSSFPHSAEAAPENGRKDLMLLLEGSQEATKKAQEQAAERVRSLQEDLAKSRSEIISLRSERDKFALEANFARERLESFMKEFEHQRDEANGILARNVEFSQLIVNYQRKIRESSESLHTVEELSRKLTMEVSFLKHEKEMLSNSEKRASDEVRSLSERVHRLQATLDTIHSTEEFREEARTVERRKQEEHIRQIEREWAEAKKELQEERDNVRTLTLDREQTIKNAMRQVEEMGKELAKALQAVAAAEARAAVAEARYSDLEKKLKSSETKVVEINGECGPSSSSAHEAVVDLHIEKEEIEKLKEEAQANKAHMLQYKSIAEVNEAALKQMEYAHENFRIEADKLKKSLEAEVMSLRERVSELENEAILKSKEAASTAAGNEEALASALAEIGSLKEENSIKMSQIAAIEIQISALKDDLENEHRRWRSAQDNYERQVILQSETIQELTKTSQALALLQKEASELRKLADAKNAENNELKGKWEVEKSMLEVAKNEAEKKYDEINEQNKILHSRLEALHIKLAEKDRRSVGISSSSGLDPLGDAGLQNVINYLRRSKEIAETEISLLKQEKLRLQSQLESALKATETAQASLHAERANSRTLLFTEEEIKSLQLQVREMNLLRESNMQIREENKHNFEECQKLREVAQKARIETENLEVLLRESQTEVETCKKEIEMQRTEKDQLEKRVGELLEQSKNIDVEDYERMKHDFHQMQINLREKDAQIEEMKRHVSEKQDRISKLEQDIANSRLELSERENKINDILQAEANMKAELEKQKKVTAQLKKRLEALSREKEELSKENQALSKQLEDYKQGKRSIGDVSGEQAMKEKEKEKEKDSRLQTLEKALERQREEYRKERDDHRMEKAKRLKTEKTIVDSIKNVNQEKAKLVDELEKHKLALKRVSDELEKLKHAKGNLPEGTSVVQLLSGPLLDDLAAAYALTVENFEKLAHSVFSELGARALPLDPSSTVDTSSSAATTGLTAPAQPPSILTPVVPATSYSPAKAAEEREKRLAILKTNAETRKTGRKLVRPRLVKSEEPQGDVDMAEIEGPNNGGKPAPSQDTETQTLPPVRKRLASSSTSDLQEDTQIQGETTSDVAPPVLKRSRGSDSPQEAAEGQAAASLENLETLRAIEESFDAIADLPQGSNEEAIDVEKEEAEISEGQTEEPKEPAQVDGTSEVELPNERASAVEEVLVKPIEREVVFDDGPKDQAEQDIQPSMIELGSEKEEGELDPDVTDIEGGGDMCNITGGTTIGEGQPETVVVPVTSPAGGDEEGLVTAAVDIGDINSPEILNDEKTAEGDVMEEVAEGSDKSNDGNEQIAVETDQTPEAAMGSESTSTSTSTVVDVGVSKQGSPTVPADPEEVKQALPVGSSSTTINLQERARQRAMLRQAGVLSPSVGRGRGRAITRGRGVRGGRGRAGRGQSSGDQG* 2089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23701985 23776140 + Vvi19g1185 Vvi19g1185 782684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1185 2088 Coils Coil 688 715 - -
Vvi19g1185 2088 Coils Coil 1061 1092 - -
Vvi19g1185 2088 Coils Coil 941 968 - -
Vvi19g1185 2088 Coils Coil 239 259 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1796 1845 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1971 2008 - -
Vvi19g1185 2088 Coils Coil 478 533 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 2048 2088 - -
Vvi19g1185 2088 Coils Coil 839 866 - -
Vvi19g1185 2088 Coils Coil 53 94 - -
Vvi19g1185 2088 Coils Coil 1489 1523 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1680 1699 - -
Vvi19g1185 2088 Coils Coil 1295 1357 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1946 2035 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1448 1495 - -
Vvi19g1185 2088 Coils Coil 1373 1470 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1878 1931 - -
Vvi19g1185 2088 Coils Coil 317 358 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1680 1779 - -
Vvi19g1185 2088 Coils Coil 1142 1169 - -
Vvi19g1185 2088 Coils Coil 1535 1569 - -
Vvi19g1185 2088 Coils Coil 800 820 - -
Vvi19g1185 2088 PANTHER NUCLEOPROTEIN TPR 1 2074 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1622 1652 - -
Vvi19g1185 2088 Coils Coil 1257 1277 - -
Vvi19g1185 2088 Coils Coil 983 1028 - -
Vvi19g1185 2088 Pfam TPR/MLP1/MLP2-like protein 1046 1173 IPR012929 GO:0006606
Vvi19g1185 2088 Coils Coil 1103 1137 - -
Vvi19g1185 2088 PANTHER NUCLEOPROTEIN TPR-RELATED 1 2074 - -
Vvi19g1185 2088 Coils Coil 723 743 - -
Vvi19g1185 2088 Coils Coil 1205 1239 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1950 1970 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1713 1752 - -
Vvi19g1185 2088 Coils Coil 165 185 - -
Vvi19g1185 2088 Coils Coil 878 933 - -
Vvi19g1185 2088 MobiDBLite consensus disorder prediction 1621 1652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1185 K09291 TPR, MLP1, MLP2; nucleoprotein TPR - vvi:100251875 3789.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1185 . . . . . . . . . . . . . . . . . Bhi05g01976 . . Lac12g0024 Hepe02g0006 . . . . . . . . . . . . . . Csa07g01225 . . . . . . Bpe15g00929 . Bma03g00486 . . . . . . . . Cpe15g00913 . . . . . . . . . . . . . . . . . Chy01g00837 Cme01g01492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004038 1 2 1 1 1 1 1 2 2 3 1 1 1 3 2 1 1 1 1 1 1 1 1 3 3 1 1 2 1 1 43