Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1186 ATGGCCTCTCAATTCCATCCTCACAACCATGCTCTCGAAGAAATGATTAGGAACCTCAAGGTTGATCCTTGTAGTCAACTGGGTGGTCCTCCAAAGGAAGGAAGCCCATCTGATGCAACATCATCTGGAGAAGCAACGGGAAGTGTTAAAGAAAGTGAAGTGGATCAAGAGTCCTTGACAACAGAACCACCACCAGTCATGCCTCCTCACACACCATCATATTATGGATACTACTATCCAGGTTTTGATGGTTCCTTTGCTGAATTGGATGACCAAGGACTGCCTTTGGAGATTCAGTATCCTGTCATGCAAGCAGATAATGGATCTCTCCTTTACTTCACACCAGGATTCCAACCTGGTTACAGCCTCTACAGCCCCGTTGTACCTGTAGCCACGATTGGTGTTGATGGACAGTATGCTGGTCAACACCCATATCCGCCAAGCACTGTGTTTGCACCAGCTATTGCTTCCCCTGGATATATTCCAACCCCTCTCCCCTATGGGTCAGAGTTGTTGCCATCATCTTACTTGTGGGATCCATCTTTTCTAGTTGGAGATGGAGCATATGGAAGTGGTTATATTGGAGTTCCAGATATTGCAGACTCCAAACAAAATTTATCCTCCCCCAGTCATCCTCGTAATCCTCCCTCAAAATCCTTTTCACTTTCTGAGTTCAACAGTCCATTAGAAGTTAAAGGCAGCTCACCATCATCGGTTCATGGCATGCGCAGTCAATTCAAATCAGCAAACAAGGCCTCCCAATATGGTTCACCTTTCCAACCAGATGATGCTCTGGGCAAGGATTACTTTCCGATTGCAAAACTTCAATCCTATAACCAGGGAAAGGGTGGATTACTCTATCCCAACAGCCCTGTTAATCTAAAAGCAAATAGTAGGGGTTGGGTTAGCACAGAAAAGCTGAAAATGAGAAGCAAGGCTAATGCTATTAGTGATTTTGGGGTGCTTGAGCAGAACCATGGTCCCAGAACAGCCAGTGCCAAGGGCGCTTTGGTGTCTGGAGGTAATGATGCTGGATCTCTTTCTGCTGATGGGAATGGAAAGAATAACTGCATAGCCTCGTTGATCAGGAGGGATCAATATAACCTTCCTGACTTTCCGACTAAATATGATCACGCGTTCTTCTTTGTCATCAAATCTTATAGTGAAGATGATATTCATAAAAGCATCAAGTATAATGTGTGGGCTAGTACTCCGAATGGCAATAAGAGGTTGGATGGTGCATATCAGGAAGCAAAGGAAAGGATGGGAGACAGAGGCAGCAAGTGTCCCGTGTTTCTTTTCTTTTCGGTTAATGCAAGTGGGCAGTTCTGTGGAGTAGCTGAGATGATTGGCCGAGTTGATTTTAATAAGAACATGGACTTCTGGCAACAGGATAAGTGGAATGGATTTTTCCCTGTCAAGTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGGTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTGTCAAAGACATCTATATTGGACGACTTCGATTTTTATGAAAGCCGCCAAAAGGTGATGCAAGACAAGAAAATCAAGCCATCTATGCCACATTTTGATCATCTACAGCAGAAAGCAGAAGACGTGATCACTGGTTTTCAGGCGGTGGATCTGTCTGCTGTGGAGAAGATTGAAGAACCTCAGGTGGGAGACAAAGCAAACGAATGA 1776 44.43 MASQFHPHNHALEEMIRNLKVDPCSQLGGPPKEGSPSDATSSGEATGSVKESEVDQESLTTEPPPVMPPHTPSYYGYYYPGFDGSFAELDDQGLPLEIQYPVMQADNGSLLYFTPGFQPGYSLYSPVVPVATIGVDGQYAGQHPYPPSTVFAPAIASPGYIPTPLPYGSELLPSSYLWDPSFLVGDGAYGSGYIGVPDIADSKQNLSSPSHPRNPPSKSFSLSEFNSPLEVKGSSPSSVHGMRSQFKSANKASQYGSPFQPDDALGKDYFPIAKLQSYNQGKGGLLYPNSPVNLKANSRGWVSTEKLKMRSKANAISDFGVLEQNHGPRTASAKGALVSGGNDAGSLSADGNGKNNCIASLIRRDQYNLPDFPTKYDHAFFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAYQEAKERMGDRGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGFFPVKWHIIKDVPNPQLRHIILENNDNKPVTNSRDTQEVRFPQGIEILNIFKNYVSKTSILDDFDFYESRQKVMQDKKIKPSMPHFDHLQQKAEDVITGFQAVDLSAVEKIEEPQVGDKANE* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23780411 23784906 - Vvi19g1186 Vvi19g1186 782685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1186 591 MobiDBLite consensus disorder prediction 203 257 - -
Vvi19g1186 591 MobiDBLite consensus disorder prediction 35 54 - -
Vvi19g1186 591 MobiDBLite consensus disorder prediction 20 70 - -
Vvi19g1186 591 Gene3D ph1033 like domains 359 535 - -
Vvi19g1186 591 PANTHER OS01G0679900 PROTEIN 31 565 - -
Vvi19g1186 591 Pfam YT521-B-like domain 381 521 IPR007275 GO:0003723
Vvi19g1186 591 ProSiteProfiles YTH domain profile. 379 520 IPR007275 GO:0003723
Vvi19g1186 591 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 31 565 IPR045168 -
Vvi19g1186 591 MobiDBLite consensus disorder prediction 203 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1186 K20102 YTHDF; YTH domain-containing family protein - vvi:100258644 1211.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .