Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1187 ATGCACCCTGCTGCAGACTACGGTATCGGTCAGTACTCTGTGGCATTTAAAGTAGGAACCCCATCCCAGAAATTCATGCTGGTTGCTGATACTGGGAGTGACTTGACTTGGATGAGTTGCAAATACCATTGTAGGAGTCGCAATTGTTCCAACCGAAAAGCCAGGAGAATCCGTCATAAGAGGGTGTTTCATGCCAATCTCTCTTCTTCCTTCAAGACAATTCCATGCTTGACAGATATGTGTAAGATTGAGCTCATGGATCTCTTCTCTCTCACTAACTGCCCCACCCCCCTCACCCCCTGTGGCTATGATTACAGGTACTCAGATGGGTCAACGGCATTAGGCTTCTTTGCCAATGAGACAGTAACAGTAGAGTTAAAAGAGGGTAGGAAGATGAAACTACATAATGTACTGATAGGGTGCAGTGAATCTTTCCAAGGCCAAAGCTTCCAAGCAGCTGATGGTGTCATGGGGTTAGGCTACAGCAAGTACTCCTTTGCAATAAAGGCTGCTGAAAAGTTTGGTGGCAAGTTCTCGTACTGCCTGGTTGATCACTTAAGCCACAAGAATGTTTCAAATTATCTCACCTTTGGCAGCAGTAGAAGCAAAGAAGCATTGTTAAACAACATGACATATACTGAACTCGTTTTAGGAATGGTTAATTCATTCTATGCTGTAAATATGATGGGCATCTCCATTGGTGGTGCCATGTTAAAAATCCCATCTGAAGTATGGGATGTAAAGGGGGCTGGTGGAACCATACTTGACTCAGGTTCCAGCCTAACATTCCTGACAGAGCCAGCATACCAGCCTGTCATGGCTGCATTGAGGGTGTCCTTGCTCAAGTTTAGAAAAGTGGAAATGGACATCGGACCATTAGAGTATTGCTTCAATTCCACAGGATTTGAGGAGTCCTTGGTGCCAAGATTAGTGTTCCATTTTGCAGATGGAGCTGAGTTTGAGCCACCAGTGAAGAGCTATGTCATCAGTGCGGCTGATGGAGTAAGGTGTCTGGGGTTCGTATCTGTAGCTTGGCCTGGGACCTCTGTGGTTGGCAACATTATGCAACAAAACCATTTGTGGGAGTTTGACTTAGGCCTAAAGAAGCTGGGTTTTGCTCCCTCCAGCTGCACCTGA 1137 45.82 MHPAADYGIGQYSVAFKVGTPSQKFMLVADTGSDLTWMSCKYHCRSRNCSNRKARRIRHKRVFHANLSSSFKTIPCLTDMCKIELMDLFSLTNCPTPLTPCGYDYRYSDGSTALGFFANETVTVELKEGRKMKLHNVLIGCSESFQGQSFQAADGVMGLGYSKYSFAIKAAEKFGGKFSYCLVDHLSHKNVSNYLTFGSSRSKEALLNNMTYTELVLGMVNSFYAVNMMGISIGGAMLKIPSEVWDVKGAGGTILDSGSSLTFLTEPAYQPVMAALRVSLLKFRKVEMDIGPLEYCFNSTGFEESLVPRLVFHFADGAEFEPPVKSYVISAADGVRCLGFVSVAWPGTSVVGNIMQQNHLWEFDLGLKKLGFAPSSCT* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23803973 23806961 - Vvi19g1187 Vvi19g1187 782686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1187 378 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 27 38 IPR001969 GO:0004190|GO:0006508
Vvi19g1187 378 Gene3D Acid Proteases 1 198 IPR021109 -
Vvi19g1187 378 CDD pepsin_A_like_plant 11 377 IPR034161 -
Vvi19g1187 378 Pfam Xylanase inhibitor C-terminal 224 373 IPR032799 -
Vvi19g1187 378 ProSiteProfiles Peptidase family A1 domain profile. 12 373 IPR033121 -
Vvi19g1187 378 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 5 377 - -
Vvi19g1187 378 SUPERFAMILY Acid proteases 5 377 IPR021109 -
Vvi19g1187 378 PRINTS Pepsin (A1) aspartic protease family signature 18 38 IPR001461 GO:0004190|GO:0006508
Vvi19g1187 378 PRINTS Pepsin (A1) aspartic protease family signature 253 264 IPR001461 GO:0004190|GO:0006508
Vvi19g1187 378 PRINTS Pepsin (A1) aspartic protease family signature 349 364 IPR001461 GO:0004190|GO:0006508
Vvi19g1187 378 Pfam Xylanase inhibitor N-terminal 12 199 IPR032861 -
Vvi19g1187 378 Gene3D Acid Proteases 199 378 IPR021109 -
Vvi19g1187 378 PANTHER OS07G0603500 PROTEIN-RELATED 5 377 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1187 - - vvi:100246744 773.852