Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1187 ATGCACCCTGCTGCAGACTACGGTATCGGTCAGTACTCTGTGGCATTTAAAGTAGGAACCCCATCCCAGAAATTCATGCTGGTTGCTGATACTGGGAGTGACTTGACTTGGATGAGTTGCAAATACCATTGTAGGAGTCGCAATTGTTCCAACCGAAAAGCCAGGAGAATCCGTCATAAGAGGGTGTTTCATGCCAATCTCTCTTCTTCCTTCAAGACAATTCCATGCTTGACAGATATGTGTAAGATTGAGCTCATGGATCTCTTCTCTCTCACTAACTGCCCCACCCCCCTCACCCCCTGTGGCTATGATTACAGGTACTCAGATGGGTCAACGGCATTAGGCTTCTTTGCCAATGAGACAGTAACAGTAGAGTTAAAAGAGGGTAGGAAGATGAAACTACATAATGTACTGATAGGGTGCAGTGAATCTTTCCAAGGCCAAAGCTTCCAAGCAGCTGATGGTGTCATGGGGTTAGGCTACAGCAAGTACTCCTTTGCAATAAAGGCTGCTGAAAAGTTTGGTGGCAAGTTCTCGTACTGCCTGGTTGATCACTTAAGCCACAAGAATGTTTCAAATTATCTCACCTTTGGCAGCAGTAGAAGCAAAGAAGCATTGTTAAACAACATGACATATACTGAACTCGTTTTAGGAATGGTTAATTCATTCTATGCTGTAAATATGATGGGCATCTCCATTGGTGGTGCCATGTTAAAAATCCCATCTGAAGTATGGGATGTAAAGGGGGCTGGTGGAACCATACTTGACTCAGGTTCCAGCCTAACATTCCTGACAGAGCCAGCATACCAGCCTGTCATGGCTGCATTGAGGGTGTCCTTGCTCAAGTTTAGAAAAGTGGAAATGGACATCGGACCATTAGAGTATTGCTTCAATTCCACAGGATTTGAGGAGTCCTTGGTGCCAAGATTAGTGTTCCATTTTGCAGATGGAGCTGAGTTTGAGCCACCAGTGAAGAGCTATGTCATCAGTGCGGCTGATGGAGTAAGGTGTCTGGGGTTCGTATCTGTAGCTTGGCCTGGGACCTCTGTGGTTGGCAACATTATGCAACAAAACCATTTGTGGGAGTTTGACTTAGGCCTAAAGAAGCTGGGTTTTGCTCCCTCCAGCTGCACCTGA 1137 45.82 MHPAADYGIGQYSVAFKVGTPSQKFMLVADTGSDLTWMSCKYHCRSRNCSNRKARRIRHKRVFHANLSSSFKTIPCLTDMCKIELMDLFSLTNCPTPLTPCGYDYRYSDGSTALGFFANETVTVELKEGRKMKLHNVLIGCSESFQGQSFQAADGVMGLGYSKYSFAIKAAEKFGGKFSYCLVDHLSHKNVSNYLTFGSSRSKEALLNNMTYTELVLGMVNSFYAVNMMGISIGGAMLKIPSEVWDVKGAGGTILDSGSSLTFLTEPAYQPVMAALRVSLLKFRKVEMDIGPLEYCFNSTGFEESLVPRLVFHFADGAEFEPPVKSYVISAADGVRCLGFVSVAWPGTSVVGNIMQQNHLWEFDLGLKKLGFAPSSCT* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23803973 23806961 - Vvi19g1187 Vvi19g1187 782686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1187 378 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 27 38 IPR001969 GO:0004190|GO:0006508
Vvi19g1187 378 Gene3D Acid Proteases 1 198 IPR021109 -
Vvi19g1187 378 CDD pepsin_A_like_plant 11 377 IPR034161 -
Vvi19g1187 378 Pfam Xylanase inhibitor C-terminal 224 373 IPR032799 -
Vvi19g1187 378 ProSiteProfiles Peptidase family A1 domain profile. 12 373 IPR033121 -
Vvi19g1187 378 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 5 377 - -
Vvi19g1187 378 SUPERFAMILY Acid proteases 5 377 IPR021109 -
Vvi19g1187 378 PRINTS Pepsin (A1) aspartic protease family signature 18 38 IPR001461 GO:0004190|GO:0006508
Vvi19g1187 378 PRINTS Pepsin (A1) aspartic protease family signature 253 264 IPR001461 GO:0004190|GO:0006508
Vvi19g1187 378 PRINTS Pepsin (A1) aspartic protease family signature 349 364 IPR001461 GO:0004190|GO:0006508
Vvi19g1187 378 Pfam Xylanase inhibitor N-terminal 12 199 IPR032861 -
Vvi19g1187 378 Gene3D Acid Proteases 199 378 IPR021109 -
Vvi19g1187 378 PANTHER OS07G0603500 PROTEIN-RELATED 5 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1187 - - - vvi:100246744 773.852
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34