Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1189 ATGGATGCCAACAACAGTGCCAGGCCCCCACCTCCCCCGGTACACCCTGCAATACAGCCCCTTTCCTACCTGCTGGGAACATGGAGAGGCCAAGGCGAGGGTGGTTTCCCCACCATCAACTCCTTCTCCTACGGCGAGGAGCTCCTCTTCTCTCATTCGGGCAAGCCGGTGATTGCGTATAGCCAGAGGACTTGGAAATTGAGCTCCGGCGAGCCTATGCACGCCGAGAGCGGCTATTGGCGGCCTAAACCCGACGGTACCATCGAAGTTGTCATCGCTCAAAGCACTGGTCTTGTTGAAGTTCAGAAAGGGACATATAATGCTGAAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACGTGGTTCAGATGGCTACCAACCTTAATAGTCTTCAACCCCATCTGAAAGCTTTGCTCAAGAAGATCTGA 495 51.92 MDANNSARPPPPPVHPAIQPLSYLLGTWRGQGEGGFPTINSFSYGEELLFSHSGKPVIAYSQRTWKLSSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKLVKLQSELVGNASKVTEISRVFELVNGELSYVVQMATNLNSLQPHLKALLKKI* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23824656 23827974 - Vvi19g1189 Vvi19g1189 782688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1189 164 SUPERFAMILY Lipocalins 12 164 IPR012674 -
Vvi19g1189 164 CDD lipocalin_heme-bd-THAP4-like 18 164 IPR014878 -
Vvi19g1189 164 Gene3D - 12 164 IPR012674 -
Vvi19g1189 164 Pfam THAP4-like, heme-binding beta-barrel domain 18 163 IPR014878 -
Vvi19g1189 164 PANTHER THAP4 PROTEIN 8 164 IPR045165 -
Vvi19g1189 164 Hamap Peroxynitrite isomerase. 10 164 IPR022939 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1189 - K23205 vvi:104877790 313.923