Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g119 ATGGCTTTATCCTCCTCCACTCTCTGTCACCAAAACCTTACAAAACCCTATTTCGTCTCTTTCCACAAACAACCCCATATTCTCTCTCATCTACAATTCCAAACCCCACCCAAAACCCTAACCCTAGACCCCAAATTCACCATCACCGGCGGTTGCAAACTCTCCGGCCATGTCCCAATCAGCGGCTCTAAGAACTCCGCATTATCGATCCTCGCCGCCACTCTTTGCTGCTCCGGCACTTCCAAGCTCCACGGGGTACCAAACCTCTCCGATACTCGAACGATGGCTTCTATTCTTCGGTCATTGGGTGTGGAAATTGAAGCCTGCAATGGCGAAATGTGGGTCAACGCTGACGGGGTTGGGTCCGTACAGCCTTGTCCGGAGGACATTGGGAAGATTCGAGGTGGGTTTTTCGTTATTGGGCCATTGCTGGCTCGGTTCGGAGAGGCAGTGGTGGCTTTGCCCGGTGGGTGTGATATTGGGACTCGCCCAGTTGATTTGTACATTAGAGGGCTGCGTGCCCTCGGCGCCATTGTCGAATTGGGGGATGGGAAAGTGCGAGCACAAGCGGCAAATGGCAGAGGATTGGTTGGAGGGAGGTTCAAACTCGATCACCCCAGTGTTGGAGCAACCGAAACTCTCATGATGGCAGCATGTATGGCTGATGGAGTGACCGTGCTTTCAAATGTTGCTAAAGAACCAGAAGTGATTGATCTTGCTCGTTTTCTGACTGGCAGTGGGGCATGTGTGGAAGGAGCAGGGAGTGATACCCTTTACATAAAGGGAAAAAACCAGTTGCATGGTTCTGAATGTATAGTACCACCTGATCGTATCGAAGCAGGCACTTTCATGCTTGCTGCAGCTATCACTCGCTCGTCCATCTCAATGTCTCCCGTCATTCCTTCCCATGTAGCATGTCTAATAGATAAGCTTTTAGCCGCTGGTTGCAAAATCACATGTGCCCATGATACCTTGGAGGTTTCAGCGGTTCCTGATGATGTTGGTCACAATTTGCAAGGCTTTGATGTTAGGACGTGCCCGTTTCCTGGGTTTCCTACAGATCTTCAACCTCAGACAATGGTGCTGCTGACAACATGCGATGGTTTGAGCATAGTGGAAGAAACCGTGTTTGAAAACCGAATGGGTCATGTAAGAGAGCTGCAAAAGCTGGGAGCCAGAATTCGGGTCTGCGGGAGCACTGCAGTGATTTGTGGCAAGGAGAAAGGAAGTGCATTGCTCAGCTCTCACCTCGTTGCAAAGGATTTAAGAGGCGGCGTGTCACTTGTCTTGGCAGGGTTGGCTGCAGAAGGAGTCACTGAAATCAGTGGCATTGCCCATATAGACCGAGGTTACGAGAATTTAGATGCCAAGCTTCGGTTACTAGGTGCTGATATCAAAAGATTGATTCCCCTCGGTTCTCCGTTGTAG 1428 50.35 MALSSSTLCHQNLTKPYFVSFHKQPHILSHLQFQTPPKTLTLDPKFTITGGCKLSGHVPISGSKNSALSILAATLCCSGTSKLHGVPNLSDTRTMASILRSLGVEIEACNGEMWVNADGVGSVQPCPEDIGKIRGGFFVIGPLLARFGEAVVALPGGCDIGTRPVDLYIRGLRALGAIVELGDGKVRAQAANGRGLVGGRFKLDHPSVGATETLMMAACMADGVTVLSNVAKEPEVIDLARFLTGSGACVEGAGSDTLYIKGKNQLHGSECIVPPDRIEAGTFMLAAAITRSSISMSPVIPSHVACLIDKLLAAGCKITCAHDTLEVSAVPDDVGHNLQGFDVRTCPFPGFPTDLQPQTMVLLTTCDGLSIVEETVFENRMGHVRELQKLGARIRVCGSTAVICGKEKGSALLSSHLVAKDLRGGVSLVLAGLAAEGVTEISGIAHIDRGYENLDAKLRLLGADIKRLIPLGSPL* 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1494736 1500193 - Vvi19g119 Vvi19g119 781618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g119 475 SUPERFAMILY EPT/RTPC-like 45 467 IPR013792 GO:0003824
Vvi19g119 475 TIGRFAM murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 45 467 IPR005750 GO:0008760|GO:0019277
Vvi19g119 475 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 49 457 IPR001986 GO:0016765
Vvi19g119 475 Gene3D Enolpyruvate transferase domain 63 273 IPR036968 GO:0016765
Vvi19g119 475 PANTHER UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE 36 467 - -
Vvi19g119 475 Gene3D Enolpyruvate transferase domain 46 466 IPR036968 GO:0016765
Vvi19g119 475 CDD UdpNAET 54 461 IPR005750 GO:0008760|GO:0019277
Vvi19g119 475 Hamap UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 43 468 IPR005750 GO:0008760|GO:0019277
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g119 - - - vvi:100262376 948.732
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .