Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1190 ATGAGCACTAGCACCCGTAGTGACAGCTTAGAGAGCTCTACCACACCCTTGAGACCCCACACTGGTGGTGATATTCGATGGGATGCTATTAATTTGGCCAATTCTAGAGACTCCCCTCTTGGGCTTAGCCATTTTCGGCTGCTCAAGCGCCTTGGCTATGGTGACATTGGAAGTGTCTATCTTGTTGAACTCAGAGGAACCACTGCCTACTTTGCAATGAAAACAGAGAAGGAGATTCTTGGACTCCTTGACCACCCATTCTTGCCCACTCTGTATTCCTACTTTGAGACTGATAAATTCTATTGCTTGGTCATGGAGTTCTGCAGTGGAGGTAATCTACATTCTCTGCGGCAGAAACAACCCAACAAGCATTTTTCTGAAGAAGCTGCCCGGTTTTATGCATCAGAGGTATTGCTAGCACTTGAGTATCTGCACATGCTAGGCATCGTGTACAGGGATCTGAAGCCAGAAAATGTGCTAGTAAGAGATGAGGGTCATATCATGCTCTCTGACTTTGACCTCTCACTCCGCTGTTCTGTGAGTCCAACGCTAGTCAAGTCTTCATCCGGGCATTCAGAACTAATGGCAGAGCCCACAAACGTGAGATCAATGTCATTTGTGGGAACCCATGAATACTTGGCCCCAGAGATCATAAGAGGAGAGGGGCATGGCAGTGCTGTGGACTGGTGGACATTTGGTATATTCTTGTACGAGCTGTTGCATGGAACAACTCCCTTCAAGGGCCAAGGCAATCGTGCCACTCTGTTTAATGTTGTAGGGCAGCCATTAAGATTTCCAGATACTCCAACAGTGAGTTTCATGGCTCGTGATCTTATAAGAGGGCTTTTGGTGAAGGAACCGCAGAAGCGAATTGCATACAAAAGGGGTGCCACAGAAATAAAACAACACCCATTCTTTGAAGGAGTGAACTGGGCCCTAGTGAGGAGCGCCATGCCTCCCCACATACCCGAACCAGTAGACTTTGGGCACTTTGCTAGTAAAGAGTCGGGCCATGCTGAGAAGAAGAATTCAGATACTGGGGGTGATAAACACAAGAATAGTCCGAATGATGCTTCTTATAATTTTTTGACAAAAAACACACTAATCAATCTTAATTTGTTGGTTTCCTTTGTTTTGTTTTGGTTTGATTCAATTCAGATTAACAATAAGAAATAA 1176 45.24 MSTSTRSDSLESSTTPLRPHTGGDIRWDAINLANSRDSPLGLSHFRLLKRLGYGDIGSVYLVELRGTTAYFAMKTEKEILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKHFSEEAARFYASEVLLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSGHSELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGQGNRATLFNVVGQPLRFPDTPTVSFMARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPEPVDFGHFASKESGHAEKKNSDTGGDKHKNSPNDASYNFLTKNTLINLNLLVSFVLFWFDSIQINNKK* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23829723 23831896 + Vvi19g1190 Vvi19g1190 782689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1190 391 PANTHER FLIPPASE KINASE 1-RELATED 193 352 - -
Vvi19g1190 391 PANTHER FLIPPASE KINASE 1-RELATED 3 192 - -
Vvi19g1190 391 MobiDBLite consensus disorder prediction 336 355 - -
Vvi19g1190 391 Gene3D Transferase(Phosphotransferase) domain 1 114 323 - -
Vvi19g1190 391 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 3 192 - -
Vvi19g1190 391 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 193 352 - -
Vvi19g1190 391 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g1190 391 Pfam Protein kinase domain 47 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1190 391 CDD STKc_phototropin_like 43 329 - -
Vvi19g1190 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vvi19g1190 391 ProSiteProfiles Protein kinase domain profile. 45 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1190 391 SMART serkin_6 45 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1190 391 SUPERFAMILY Protein kinase-like (PK-like) 36 331 IPR011009 -
Vvi19g1190 391 Gene3D Phosphorylase Kinase; domain 1 76 113 - -
Vvi19g1190 391 MobiDBLite consensus disorder prediction 1 19 - -
Vvi19g1190 391 Gene3D Phosphorylase Kinase; domain 1 33 75 - -
Vvi19g1190 391 MobiDBLite consensus disorder prediction 336 352 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76412 PF00069 Pkinase 1.30E-53 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1190 - - vvi:100241619 668.307