Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1191 ATGGCTTTGGAGAAGATCAAGGTGGACAACCCCATCGTTGAGATGGATGGTGATGAAATGACTCGGGTTTTCTGGAAATCAATCAAGGATAAGCTTATTCTCCCCTTTCTAGAGTTGGATATCAAATACTTTGATCTTGGCCTACCCAACCGTGAGGCCACTCGTGATCAAGTTACGGTTGATAGTGCTCATGCCACTCTTAAGTATAATGTGGCGATTAAGTGTGCAACTATAACTCCAGATGAAGCCCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAAGAGTCCAAATGGGACTATTAGGAACATTTTAAATGGTACTGTTTTCAGAGAACCAATTATCTGCAAGAATGTTCCTCGCCTCATCCCAGGTTGGTCCAAGCCAATATGCATTGGAAGGCATGCTTATGGGGATCAATATCGAGCAACTGATGCCGTTATTGAAGGATCCGGAAAACTGAAAATGGTGTTTGTGCCTGATGGACCAAATGAGATAAAAGAATTGGAGGTTTACCAATTTACTGGTGCTGGAGGAGTTGCTTTGTCAATGTATAATACTGATGAGTCCATCCGCGCTTTTGCTGAGGCTTCAATGAACATGGCTTACCAGAAAAGGTGGCCACTTTATCTTTCAACAAAAAATACCATTCTTAAGAAATATGATGGCAGATTTAAAGACATATTCCAAGAGGTTTATGAAGCTCAATGGAAATCCAAGTTTGAAGCTGTGGGGATATGGTATGAGCATCGTCTCATTGATGATATGGTTGCTTATGCCCTTAAAAGTGATGGCGGCTATGTATGGGCCTGCAAAAATTATGATGGAGATGTCCAGAGTGATTTCCTAGCCCAAGGATTTGGATCTCTTGGGTTGATGACTTCAGTACTGGTGTGCCCAGATGGAAAGACTATTGAAGCTGAAGCAGCACATGGCACAGTTACCCGCCATTACAGGGTTCATCAGAAAGGAGGTGAAACCAGCACAAACAGCATAGCCTCTATCTTTGCCTGGTCAAGGGGTCTTGCACACAGGGCAAAGTTGGATGGGAATGCTAGGCTATTGGATTTTACTGAGAAACTGGAAGCAGCCTGTATTGCAACTGTAGAATCAGGGAAGATGACTAAGGATCTTGCACTTCTTATTCACGGGCCTAAGGTTACTAGGGCTCAGTATCTGAACACTGAAGAGTTCATAGAAGCTGTGGCTGAGGAACTGAGAGCAAGGCTGCCTAAAAGATCGAAGTTTTGA 1251 43.33 MALEKIKVDNPIVEMDGDEMTRVFWKSIKDKLILPFLELDIKYFDLGLPNREATRDQVTVDSAHATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWSKPICIGRHAYGDQYRATDAVIEGSGKLKMVFVPDGPNEIKELEVYQFTGAGGVALSMYNTDESIRAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAVGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACIATVESGKMTKDLALLIHGPKVTRAQYLNTEEFIEAVAEELRARLPKRSKF* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23832464 23836195 + Vvi19g1191 Vvi19g1191 782690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1191 416 PIRSF IDH_NADP 1 413 IPR004790 GO:0004450|GO:0006102
Vvi19g1191 416 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 415 - -
Vvi19g1191 416 Gene3D Isopropylmalate Dehydrogenase 3 414 - -
Vvi19g1191 416 SMART Iso_dh_2 11 402 IPR024084 -
Vvi19g1191 416 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Vvi19g1191 416 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
Vvi19g1191 416 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 5 410 IPR004790 GO:0004450|GO:0006102
Vvi19g1191 416 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Vvi19g1191 416 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 415 IPR004790 GO:0004450|GO:0006102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1191 K00031 - vvi:100243260 844.343