Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1194 ATGGCGAATCAACTCTACGGCTACAACCCTAGCTACGGAGCTGCAGCATCCAATCTCTCCTCCGTATATCCTTCTCGATCTGTCACAGATCCGTTTCTGTCCGATTCTTCCCTTCTTTCCTCTTCCAGATATCTCTCCTCCGATCATCTCTCTTCCGATCCCTCTTACTATTCCGTTACCGAGCGTCATTCTTCCATGTTCGACGGCCTCCGCTTCTCTGCTTCCGATATCGGTGGCGCCGGTGCTTTCTCTTCAAGAATTCCTGGCGGAATTGGTGCCTCTGTGTCGACGCACGGTGTTGATGTTGGTGCTTCTGTCGACCCCCTCGTTGCTGGCCTCAAGCGGTCTTCTGAAGCGCTCTACCATCCATCTGTTCTGGGTGCCCATAACACGATTGGGCAAAGTGAAGCTTGGTTTTCTACCAATTCTCTAGCCAAGCGCCCCAGATTCGAGAGTGCCAGCAATTTACCTATTTATCCACAAAGGCCAGGAGAAAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAATTGTTGCTGCAAATGAATTCCTTCCCCAGAGGCCGGGAGAGCCAGATTGTCCATACTTTATGAAGACACAAAAATGCAAGTTCGGTCATAAGTGCAAGTTTAACCATCCAAAAGATCAAATAATTTCTTTGGGTGCTCCAGAAAATACTGATGTTTTTGTTTTACCTGAGAGGCCCTCTGAGCTCCCATGTGCGTTCTATGTGAAGACTGGGAAATGTAAATTTGGTGCCACCTGCAAGTTTCATCACCCAAAAGATATACAAATAGCATCAACTGGAAAAAATAATGCTGATGGTGAACAGGCTGAAACAGGAGCCAAGGGTGCTGGAACAACTGGGGATGTGAAGCTACCTGTTTCAGTCACTCCAGCGCTAGTACATAACTCCAAAGGACTCCCTATGAGACTGGGTGAAGTTGACTGTCCGTTCTACCTGAAAACTGGCAGTTGCAAATATGGTGCCACTTGCCGCTACAATCATCCAGACAGGAATGCAATCAATCCACCAGCTGCTGCAATAGGCCATGCTATTGTAGCCTCTCCTGCAGCTAATCTGAATGTTGGAGTGGTTAATCCAGTCACATCTATTCTTCATCCTATTGACCCCAGGCTTTCGCAAACGATGGGGGTGGGCCCCACTATTTACCCTCAAAGACCTGGACAGATGGAATGTGATTTTTATATGAAAACTGGAGAATGTAAGTTTGGGGAAAGATGCAAATTTCATCACCCTATTGATCGATCTGCACCAACAGCTACAAAGTTACAACAAAATATTAGGCTCACTCTTGCAGGTTTTCCTAGGAGAGAGGGTACAATTATCTGCCCTTTCTACTTGAAGACTGGCACCTGCAAGTATGGGGTAACATGCAAATTTGATCACCCACCCCCTGGAGAGGTCATGGCCATGGCAACATCACAGGGAGCATCCACATCTGCTGGAGAGGAAGCAAATGGGGACGAAAAAGAGGATGAAACTGCTAAAGAAGAAGAACAGTGA 1608 46.83 MANQLYGYNPSYGAAASNLSSVYPSRSVTDPFLSDSSLLSSSRYLSSDHLSSDPSYYSVTERHSSMFDGLRFSASDIGGAGAFSSRIPGGIGASVSTHGVDVGASVDPLVAGLKRSSEALYHPSVLGAHNTIGQSEAWFSTNSLAKRPRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPIVAANEFLPQRPGEPDCPYFMKTQKCKFGHKCKFNHPKDQIISLGAPENTDVFVLPERPSELPCAFYVKTGKCKFGATCKFHHPKDIQIASTGKNNADGEQAETGAKGAGTTGDVKLPVSVTPALVHNSKGLPMRLGEVDCPFYLKTGSCKYGATCRYNHPDRNAINPPAAAIGHAIVASPAANLNVGVVNPVTSILHPIDPRLSQTMGVGPTIYPQRPGQMECDFYMKTGECKFGERCKFHHPIDRSAPTATKLQQNIRLTLAGFPRREGTIICPFYLKTGTCKYGVTCKFDHPPPGEVMAMATSQGASTSAGEEANGDEKEDETAKEEEQ* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23853479 23873991 + Vvi19g1194 Vvi19g1194 782693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1194 535 SUPERFAMILY CCCH zinc finger 422 450 IPR036855 GO:0046872
Vvi19g1194 535 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Vvi19g1194 535 SMART c3hfinal6 472 499 IPR000571 GO:0046872
Vvi19g1194 535 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Vvi19g1194 535 SMART c3hfinal6 421 448 IPR000571 GO:0046872
Vvi19g1194 535 SMART c3hfinal6 214 241 IPR000571 GO:0046872
Vvi19g1194 535 SMART c3hfinal6 338 365 IPR000571 GO:0046872
Vvi19g1194 535 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Vvi19g1194 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 474 499 IPR000571 GO:0046872
Vvi19g1194 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 241 IPR000571 GO:0046872
Vvi19g1194 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 426 447 IPR000571 GO:0046872
Vvi19g1194 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 188 IPR000571 GO:0046872
Vvi19g1194 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 288 IPR000571 GO:0046872
Vvi19g1194 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 364 IPR000571 GO:0046872
Vvi19g1194 535 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 100 515 - -
Vvi19g1194 535 MobiDBLite consensus disorder prediction 295 314 - -
Vvi19g1194 535 Gene3D - 420 515 - -
Vvi19g1194 535 Gene3D - 161 247 - -
Vvi19g1194 535 Gene3D - 248 299 - -
Vvi19g1194 535 Gene3D - 324 371 - -
Vvi19g1194 535 ProSiteProfiles Zinc finger C3H1-type profile. 338 366 IPR000571 GO:0046872
Vvi19g1194 535 SUPERFAMILY CCCH zinc finger 264 288 IPR036855 GO:0046872
Vvi19g1194 535 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Vvi19g1194 535 ProSiteProfiles Zinc finger C3H1-type profile. 472 500 IPR000571 GO:0046872
Vvi19g1194 535 SUPERFAMILY CCCH zinc finger 341 365 IPR036855 GO:0046872
Vvi19g1194 535 PANTHER CCCH ZINC FINGER/TIS11-RELATED 100 515 IPR045877 GO:0003729
Vvi19g1194 535 MobiDBLite consensus disorder prediction 521 535 - -
Vvi19g1194 535 MobiDBLite consensus disorder prediction 504 535 - -
Vvi19g1194 535 SUPERFAMILY CCCH zinc finger 219 243 IPR036855 GO:0046872
Vvi19g1194 535 ProSiteProfiles Zinc finger C3H1-type profile. 421 449 IPR000571 GO:0046872
Vvi19g1194 535 SUPERFAMILY CCCH zinc finger 474 499 IPR036855 GO:0046872
Vvi19g1194 535 ProSiteProfiles Zinc finger C3H1-type profile. 214 242 IPR000571 GO:0046872
Vvi19g1194 535 SUPERFAMILY CCCH zinc finger 163 189 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1194 - - - vvi:100260359 1059.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14401 PF00642 zf-CCCH 1.20E-10 CL0537 Vvi TF