Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1195 ATGTCCCCCGTTCCCCGGAAGAGGAGGAGGAGGAGTTCCAAAAACCCATCCACATTCCTATCCTCATCCTTATCTCTTGATGACAACTTCAATATCACGTCTTCTTCCGCTGCTGTCACCGCTTCTTCCCCGTCTTCACCACCTCCGCAGCCCGAAAAGGAGGAGGAGGATGATGTAAAGAGAAAGGCCCCTGACATTCCCACGCTTTTCAGGAGATTCTGGAAAGTAGCGGCTCCGTACTGGTGGTCAGACGACAAGGTACAAGCCAGATTGCAGCTGGCGGCTGTGTTTGCGCTCACTCTAGGAACCACTGGGATCAGTGTCGGTTTCAATTTCCTGGGCCGCGACTTCTACAATGCCCTCGCCAATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCGTTCTTTGTGTTGAGGGATTATGCCAGAGAAATTCTTGCTTTAAGATGGAGATCTTGGATGACAAGCTATTACATGGAACGCTATCTAAAGAATTGGACATTCTACAAAATACAGTCCCAATCCATAATTGATAATCCAGATCAGCGGATTGTTGACGATTTAAGTTCCTTCACAGGAACAGCGCTTTCATTCTCTCTGGCATTTTTTAATGCTGCTGTAGACTTGATATCATTTAGTAACATCCTGTATGGCATCTACCCACCGCTTTTTGTTGTACTTCTTGTATATTCAATTGGTGGAACAGCTATTAGTGTTTTTCTTGGAAGGGGACTGGTAAACCTAAATTTCTTGCAAGAGAAGAAAGAAGCAGATTTTCGTTATGGACTTGTGCGTATTCGTGAAAATGCTGAATCAATTGCGTTCTATAGTGGCGAGGAAAGTGAAATGCAACTTCTGATTCAGCGTTTCAGGAGTGCTTTTGAAAATTTAACCCAATTGTTGATTTCTTCTAGAAATCTAGAATTCTTTACCAGTGGCTACCGCTACCTTATTCAGATTCTTCCAGCTGCAGTTGTTGCTCCGATGTATTTCTCAGGAAAAATTGAGTTTGGTGTCATAAATCAGTCTGTATCTGCTTTCAATCACATCCTTGGTGATTTTTCCCTCATTGTATACCAGTTTCAGGCGATAAGTGCCTTCTCAGCTGTCATTGATCGACTTGGTGAATTTGATGATATTCTGGATAACAGCAGCTCTAAAGATCTCTCTGACCCTTCAGAAGAAATTAATCTTGTGTACGATGATGTAAAAAGTTTGACCTTGTTGGAGTCTAATGGATCTATGGCCATGGATAAGTGTCAAAAGTTACTTGACATTGAGAATTTGACTCTCCTGACACCAAAAAGTAAAACTGCACTTATTTGGGATTTATCGTTGGAGATATATGAAAAGGATCATTTGCTGGTAACAGGACCTAGTGGGAGTGGTAAGACTTCTTTGTTACGAGCTCTGGCTGGTCTTTGGACAACTCCTTCACAAGATACATATCCGGGAGTTGAACAACCCAAAAACAAAGATTCTAGAGGCATATTTTTCCTTCCTCAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGGCACTCTTCCTTTCTTGATGGGGGTATCTACCTTGGAAAATGAGGGAGAAAATCCTAGGAAGCCCACAACAGATGATATAATACGGGTTCTAGAGGACGTTCGCCTTGGCTATATACTTTCTCGTTTTAATAGTTTAGATTCCACATATGAGTGGTCCAGTGTTCTTTCCCTTGGTGAGCAGCAACGCCTTGCATTTGCACGTCTCCTGCTTTCAAAACCAAATTTGGTTCTACTAGATGAATCCACCAGCGCCTTGGATGAAGCTAATGAGGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATTGGCCATCGAAGAACCCTTTATGGTTACCACAATAGGCGCTTACATATATCTGCAGCAGATCCTAACAGTACACAACGTAATTGGTACATTGAGCCCATCAATCAGGACACCATGTACAATTTGTCAAAGCTGTAG 2094 42.69 MSPVPRKRRRRSSKNPSTFLSSSLSLDDNFNITSSSAAVTASSPSSPPPQPEKEEEDDVKRKAPDIPTLFRRFWKVAAPYWWSDDKVQARLQLAAVFALTLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPFFVLRDYAREILALRWRSWMTSYYMERYLKNWTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLAFFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISVFLGRGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYSGEESEMQLLIQRFRSAFENLTQLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDILDNSSSKDLSDPSEEINLVYDDVKSLTLLESNGSMAMDKCQKLLDIENLTLLTPKSKTALIWDLSLEIYEKDHLLVTGPSGSGKTSLLRALAGLWTTPSQDTYPGVEQPKNKDSRGIFFLPQRPYMVLGTLRQQLLYPTWAEDVIPVTDGDEPDGTLPFLMGVSTLENEGENPRKPTTDDIIRVLEDVRLGYILSRFNSLDSTYEWSSVLSLGEQQRLAFARLLLSKPNLVLLDESTSALDEANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHISAADPNSTQRNWYIEPINQDTMYNLSKL* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23874563 23889349 + Vvi19g1195 Vvi19g1195 782694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1195 697 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 377 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1195 697 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 50 687 - -
Vvi19g1195 697 Gene3D - 425 674 IPR027417 -
Vvi19g1195 697 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 50 687 - -
Vvi19g1195 697 Gene3D ABC transporter type 1, transmembrane domain 50 391 IPR036640 GO:0005524|GO:0016021
Vvi19g1195 697 SUPERFAMILY ABC transporter transmembrane region 72 389 IPR036640 GO:0005524|GO:0016021
Vvi19g1195 697 CDD ABCD_peroxisomal_ALDP 437 670 - -
Vvi19g1195 697 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 435 697 IPR003439 GO:0005524
Vvi19g1195 697 ProSitePatterns ABC transporters family signature. 601 615 IPR017871 GO:0005524
Vvi19g1195 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 669 IPR027417 -
Vvi19g1195 697 SMART AAA_5 461 673 IPR003593 -
Vvi19g1195 697 Pfam ABC transporter 454 629 IPR003439 GO:0005524
Vvi19g1195 697 MobiDBLite consensus disorder prediction 1 22 - -
Vvi19g1195 697 Pfam ABC transporter transmembrane region 2 85 342 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1195 697 MobiDBLite consensus disorder prediction 36 61 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1195 - - vvi:100258729 1290.02