Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1196 ATGAAGTACGTGTTGGTGACTGGTGGCGTCGTCAGTGGCCTCGGCAAAGGAGTCACCGCCAGTAGCATCGGACTTCTCCTCAAGGCCTGCGGACTTCGTGTCACTTCTATTAAGATTGATCCTTACCTGAACACCGATGCAGGGACAATGTCTCCTTTTGAACATGGAGAAGTGTTTGTATTAGATGATGGCGGTGAGGTGGATCTGGATCTTGGAAACTATGAACGATTCTTAGATATCAAGTTGACTCGTGACAATAACATAACAACTGGAAAGATTTATCAGTCGGTCATCGATAAGGAGAGAAGAGGTGATTATCTTGGAAAAACTGTTCAGGTTGTTCCACACATTACAGATGCCATTCAAGAGTGGATTGAGCGTGTAGCAATTGTACCGGTGGATGGGAAAGAGGGTCCAGCTGATGTCTGTGTCATAGAATTGGGTGGAACTATCGGGGACATAGAATCTATGCCTTTTATCGAGGCACTTGGCCAATTCTCATACCGTGTTGGCCCTGGCAATTTCTGCTTGATTCATGTCAGTCTTGTGCCTGTTCTCAATGTTGTCGGTGAACAGAAAACAAAGCCTACCCAGCATAGTGTTCGTGGACTTAGAGGGCTGGGGTTGACGCCAAATATTTTAGCTTGCCGCAGTACAAAGGCACTAGATGAAAATGTTAAGGCCAAACTCTCTCAATTTTGTCATGTGCCGGCAGAAAACATCATAACTCTCTATGATGTTCCAAACATTTGGCACATCCCTTTGCTACTAAGAGACCAGAAGGCACATGAAGCAATCTTGAAAAGATTGAACCTTATAGGTGTTGCTAGGGAGCCTGATCTTAAGGAATGGACCATCAGGACAGAAGTTTGTGACACGTTGCATAATCCTGTCAGGATTGCCATGGTTGGAAAATATACTGGCCTTTCAGATGCTTATCTCTCTGTCTTGAAGGCTCTTTTGCATGCTTCTGTTGCTTGTCATCGGAAGCTTATTGTAGAGTGGATTGCCGCCGATGATCTTGAAGATGTAACTGCAAAAGAGGCCCCTGATGCTCATAAAGCTGCATGGGATCTTTTGAAGGGCGCTGATGGTATTCTAGTTCCAGGAGGCTTTGGTGATCGAGGAGTGCAGGGGAAAATTCTTGCAGCGAAGTATGCTCGAGAAAAAGATGTTCCATTTCTTGGTATTTGTCTGGGAATGCAAATTGCTGTCATTGAGTTTGCACGGTCTGTTCTTGGCTTGCAAGATGCCAACAGCACAGAGTTTGATCCAAAAACAAAGAATCCCTGTGTTATATTTATGCCAGAGGGCTCAAAAACTCACATGGGAGGAACAATGCGTCTGGGATCAAGGAGGACATACTTTGAGTTTGCTGACTGTAAATCTGCAAAGTTGTATGGTGGTGTGAGCTTTGTTGATGAGCGACATCGGCATAGATACGAGGTCAATCCCAATATGACATCACAACTTGAAGATGCTGGTCTCTCATTTGTAGGCAAAGATGAAACTGGTCACCGCATGGAGATTGTTGAACTGCCTGATCATCCATACTTCGTTGGTGTTCAGTTCCATCCTGAATTCAAGTCAAGGCCAGGAAAACCTTCCGCACTTTTCTTAGGCCTTATAGCAGCAGCATGTGACCATGTAAGCTCGGTGGTGCCAAAAAAGATTGTCATGAGTAATGGACAATCAATGATCAAAGGCCATCAAAATGGAAATGCCACCAAGCTTTCCAATGGATTGGTAAATGGTGTGTATAGCAATGGGAATGGTGTGCACTTTTAG 1788 44.63 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDAIQEWIERVAIVPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLTPNILACRSTKALDENVKAKLSQFCHVPAENIITLYDVPNIWHIPLLLRDQKAHEAILKRLNLIGVAREPDLKEWTIRTEVCDTLHNPVRIAMVGKYTGLSDAYLSVLKALLHASVACHRKLIVEWIAADDLEDVTAKEAPDAHKAAWDLLKGADGILVPGGFGDRGVQGKILAAKYAREKDVPFLGICLGMQIAVIEFARSVLGLQDANSTEFDPKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFEFADCKSAKLYGGVSFVDERHRHRYEVNPNMTSQLEDAGLSFVGKDETGHRMEIVELPDHPYFVGVQFHPEFKSRPGKPSALFLGLIAAACDHVSSVVPKKIVMSNGQSMIKGHQNGNATKLSNGLVNGVYSNGNGVHF* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23921593 23931529 + Vvi19g1196 Vvi19g1196 782695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1196 595 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Vvi19g1196 595 TIGRFAM PyrG: CTP synthase 1 545 IPR004468 GO:0003883|GO:0006221
Vvi19g1196 595 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Vvi19g1196 595 PANTHER CTP SYNTHASE 1 567 IPR004468 GO:0003883|GO:0006221
Vvi19g1196 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Vvi19g1196 595 SUPERFAMILY Class I glutamine amidotransferase-like 297 549 IPR029062 -
Vvi19g1196 595 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
Vvi19g1196 595 PANTHER CTP SYNTHASE 1 567 - -
Vvi19g1196 595 Gene3D - 295 561 IPR029062 -
Vvi19g1196 595 Gene3D - 1 292 IPR027417 -
Vvi19g1196 595 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Vvi19g1196 595 Pfam Glutamine amidotransferase class-I 309 544 IPR017926 -
Vvi19g1196 595 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1196 K01937 pyrG, CTPS; CTP synthase [EC:6.3.4.2] - vvi:100248481 1186.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01233 . . . . . . . . . . . . . . . . . Cpe15g00917 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000805 1 2 2 1 2 4 4 4 4 2 4 3 3 3 2 2 3 4 4 4 3 3 3 3 3 3 3 6 3 3 91