Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1196 ATGAAGTACGTGTTGGTGACTGGTGGCGTCGTCAGTGGCCTCGGCAAAGGAGTCACCGCCAGTAGCATCGGACTTCTCCTCAAGGCCTGCGGACTTCGTGTCACTTCTATTAAGATTGATCCTTACCTGAACACCGATGCAGGGACAATGTCTCCTTTTGAACATGGAGAAGTGTTTGTATTAGATGATGGCGGTGAGGTGGATCTGGATCTTGGAAACTATGAACGATTCTTAGATATCAAGTTGACTCGTGACAATAACATAACAACTGGAAAGATTTATCAGTCGGTCATCGATAAGGAGAGAAGAGGTGATTATCTTGGAAAAACTGTTCAGGTTGTTCCACACATTACAGATGCCATTCAAGAGTGGATTGAGCGTGTAGCAATTGTACCGGTGGATGGGAAAGAGGGTCCAGCTGATGTCTGTGTCATAGAATTGGGTGGAACTATCGGGGACATAGAATCTATGCCTTTTATCGAGGCACTTGGCCAATTCTCATACCGTGTTGGCCCTGGCAATTTCTGCTTGATTCATGTCAGTCTTGTGCCTGTTCTCAATGTTGTCGGTGAACAGAAAACAAAGCCTACCCAGCATAGTGTTCGTGGACTTAGAGGGCTGGGGTTGACGCCAAATATTTTAGCTTGCCGCAGTACAAAGGCACTAGATGAAAATGTTAAGGCCAAACTCTCTCAATTTTGTCATGTGCCGGCAGAAAACATCATAACTCTCTATGATGTTCCAAACATTTGGCACATCCCTTTGCTACTAAGAGACCAGAAGGCACATGAAGCAATCTTGAAAAGATTGAACCTTATAGGTGTTGCTAGGGAGCCTGATCTTAAGGAATGGACCATCAGGACAGAAGTTTGTGACACGTTGCATAATCCTGTCAGGATTGCCATGGTTGGAAAATATACTGGCCTTTCAGATGCTTATCTCTCTGTCTTGAAGGCTCTTTTGCATGCTTCTGTTGCTTGTCATCGGAAGCTTATTGTAGAGTGGATTGCCGCCGATGATCTTGAAGATGTAACTGCAAAAGAGGCCCCTGATGCTCATAAAGCTGCATGGGATCTTTTGAAGGGCGCTGATGGTATTCTAGTTCCAGGAGGCTTTGGTGATCGAGGAGTGCAGGGGAAAATTCTTGCAGCGAAGTATGCTCGAGAAAAAGATGTTCCATTTCTTGGTATTTGTCTGGGAATGCAAATTGCTGTCATTGAGTTTGCACGGTCTGTTCTTGGCTTGCAAGATGCCAACAGCACAGAGTTTGATCCAAAAACAAAGAATCCCTGTGTTATATTTATGCCAGAGGGCTCAAAAACTCACATGGGAGGAACAATGCGTCTGGGATCAAGGAGGACATACTTTGAGTTTGCTGACTGTAAATCTGCAAAGTTGTATGGTGGTGTGAGCTTTGTTGATGAGCGACATCGGCATAGATACGAGGTCAATCCCAATATGACATCACAACTTGAAGATGCTGGTCTCTCATTTGTAGGCAAAGATGAAACTGGTCACCGCATGGAGATTGTTGAACTGCCTGATCATCCATACTTCGTTGGTGTTCAGTTCCATCCTGAATTCAAGTCAAGGCCAGGAAAACCTTCCGCACTTTTCTTAGGCCTTATAGCAGCAGCATGTGACCATGTAAGCTCGGTGGTGCCAAAAAAGATTGTCATGAGTAATGGACAATCAATGATCAAAGGCCATCAAAATGGAAATGCCACCAAGCTTTCCAATGGATTGGTAAATGGTGTGTATAGCAATGGGAATGGTGTGCACTTTTAG 1788 44.63 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDAIQEWIERVAIVPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLTPNILACRSTKALDENVKAKLSQFCHVPAENIITLYDVPNIWHIPLLLRDQKAHEAILKRLNLIGVAREPDLKEWTIRTEVCDTLHNPVRIAMVGKYTGLSDAYLSVLKALLHASVACHRKLIVEWIAADDLEDVTAKEAPDAHKAAWDLLKGADGILVPGGFGDRGVQGKILAAKYAREKDVPFLGICLGMQIAVIEFARSVLGLQDANSTEFDPKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFEFADCKSAKLYGGVSFVDERHRHRYEVNPNMTSQLEDAGLSFVGKDETGHRMEIVELPDHPYFVGVQFHPEFKSRPGKPSALFLGLIAAACDHVSSVVPKKIVMSNGQSMIKGHQNGNATKLSNGLVNGVYSNGNGVHF* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23921593 23931529 + Vvi19g1196 Vvi19g1196 782695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1196 595 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Vvi19g1196 595 TIGRFAM PyrG: CTP synthase 1 545 IPR004468 GO:0003883|GO:0006221
Vvi19g1196 595 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Vvi19g1196 595 PANTHER CTP SYNTHASE 1 567 IPR004468 GO:0003883|GO:0006221
Vvi19g1196 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Vvi19g1196 595 SUPERFAMILY Class I glutamine amidotransferase-like 297 549 IPR029062 -
Vvi19g1196 595 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
Vvi19g1196 595 PANTHER CTP SYNTHASE 1 567 - -
Vvi19g1196 595 Gene3D - 295 561 IPR029062 -
Vvi19g1196 595 Gene3D - 1 292 IPR027417 -
Vvi19g1196 595 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Vvi19g1196 595 Pfam Glutamine amidotransferase class-I 309 544 IPR017926 -
Vvi19g1196 595 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1196 K01937 - vvi:100248481 1186.02