Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1197 ATGATGCCAGCAAGTGGACAGCTCTCAGTTCCTCCAGGCTTTCGATTCCACCCTACTGACGAAGAGCTTCTCCATTATTATTTAAGGAAGAAAGTCTCTTATGAAGCCATCGACCTTGATGTTATCAGGGAAGTGGATCTCAACAAGCTGGAGCCCTGGGACCTAAAAGATAAATGCCGAATTGGATCAGGCTCTCAGAACGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATACCCAACTGGAACTCGAACAAACCGAGCAACCATGGCTGGTTTTTGGAAGGCAACAGGGAGGGACAAGGCCATCCACCTTAGCAACTCCAAGAGGATTGGCCTGAGAAAAACCCTAGTCTTCTACACTGGGCGTGCTCCTCACGGCCAAAAGACTGACTGGATTATGCATGAGTATCGCCTGGATGATGACAATGCCGATGTTCAGGAAGATGGCTGGGTGGTCTGCAGGGTATTTAAGAAGAAAAATCATAATAGAGGGTTTCAATCAGAAGCTGCTCAAGAAGAATACTTGACTCATATGAGAGCAAGTGGGTCTGCTCTGTTGGAGCCAAAACAAAATGTGCAAGCACTCTACGATTTTAACTTTGATGGCTCCATGCATCTCCCGCAGTTGTTGAGTCCAGAATCAGCAGTGCCTCCATCCTTCATATCACCGCTCTCCTTGAACACTATGGACATCGAGTGTTCCCAGAACTTGTTGAGGTTAACATCAACTGTCGTTGATCATGTGGGCACTTCAGCTCAGAAATTTCCATTCCAATATCTTGGTTGTGAAACCGACATTTTGAAATTTTCCAAGTAG 819 45.79 MMPASGQLSVPPGFRFHPTDEELLHYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGSQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAIHLSNSKRIGLRKTLVFYTGRAPHGQKTDWIMHEYRLDDDNADVQEDGWVVCRVFKKKNHNRGFQSEAAQEEYLTHMRASGSALLEPKQNVQALYDFNFDGSMHLPQLLSPESAVPPSFISPLSLNTMDIECSQNLLRLTSTVVDHVGTSAQKFPFQYLGCETDILKFSK* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23954167 23955962 - Vvi19g1197 Vvi19g1197 782696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1197 272 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Vvi19g1197 272 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 255 - -
Vvi19g1197 272 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Vvi19g1197 272 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 6 255 - -
Vvi19g1197 272 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Vvi19g1197 272 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14402 PF02365 NAM 3.80E-38 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1197 - - vvi:100255276 546.969