Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g12 ATGGCTGAAAATGTATCAGAAGACGCCCACGACTATTCTTTACTCAAGGATCTCAGATTGCAAATCGGTGTTGAAGATTCATCTTTCTCCCTCTGCTTTTGGGTTTACCTCATGAACTCCACTCCATTTCCTGCTACAATAATCGGACAGGTGCATTCAGACATCACAGGCAGTGCCCCTTTTCTTGTTTTAAATGAAAAGAAAAAAATGATGCTTTTACCATTGCTTTATCTACACAGAGAAGCTCTCTATCCTGGAAATTCCACTTCATGGACTGAAGTTCCCTCTGCATCTGCAGAGGTTGACTTTCCCCTCAAGAGATGGGTTCATGTGGGATGTGAGGTTGCTACAGATTTTATGCGGCTTCACATTGATGGCAAGATTGTGGGAGAGAAGCTTCTATCTTCCTTGTCTAACAATGAATCTGATTCAAATGGTTCAGGGAGAGTAACTTTGGTTGGTATTGGTGGAGATGATGCTGTACAGGGTTATATCCATAATGCAAAAATCTTGCCTTTAACATTTTCTATCAAGGATCACTATGTTCAGGACCCGCCTTTACAACTATCTATTGATAGTTCAACTGCCTTAGATATTGAAGAGGACAGTGATGGTGTTTGGAGCATTGTTGGTGGCAAGGCATCTTGCCGCAGGAATTTTTCCTTGGATGTTATTTTATTAGATGCCTTGGGCCAGCCTGTGAACAAGGAAATAGAGGTTGATGCTTCACTCTTGTATGCTGATAATGGGGAACCGGTTGAGAAGCCAAATGATTCAGAAGCTCCTCTTCTAACGAGCTATGATGGGATTGAATTTTCTTCTTCTGATAGACCAAGTAAACTATCAAATGGACGTGCATCCTTTAAGCTCAAGATATCTCAGCTCTCTTCCAAGTGTGATAATAGATTGTTCCACATTAAGTTTTCCATACCAAAAATTGGAACATATCCTTTCCTAGAGACCATCTCCCATTCAATTCATTGTATCTCACGGAATCGTAATACCCGTCCATCATTAAAGAGGATCAAATCAGGACAAGAAAAATCATCTGCAACATTTATGGTCAATAATGTGTGTCAGACACATTTGGAGGGCAGACCAGAAAATGTTGAAGAAACAGAAAATTCTTCATCTCATTCGGAGAGCACTGAAGAAGGAAACCCATTTTTCAACAATATGTCAAGTTATAAAAATCAAATTTCAGATTTAACCATTTTCAAGTATTGCTTGGGAGGCAATGCTGATAGGTGTCTTCTGCTCAAAGAGATTGCATCCTTTGCTTCTGAACAAGAGTTGGAAGACTTTGCACAGATGGTTGCTCTATACTCGGGATGTTCCCACCACCGGTGCCAAATAATAATCACAAGGAAATTGATAGAGGAGGGAACAAAAGCTTGGAATTTGATCTCTCAAAACAATCACCAGGTGCATTGGGAGAATGTGGTTTTTGAAATTGAAGAATTATTCATGAAGATTGCTCACTGCAGTACTAGATCTCTAACACATGAGGACTTAGAGCTTTTGAGGAGAATTTCTGGATGCCAGGAGTACCTTGACCGGGAAAATTTTGATAAAATGTGGTATTGGCTATATCCTGTTGCTTTTACATTATCAAGAGATTGGATAAATGCAACTTGGTGTTCTGCCTCACCAAAGTGGATAGAAGGGTTTGTTACAAAAGAAGAAGCAGAGTCTTCACTTCAAGGTCCAAGGGGCCTTCAACAACCTGGGACATTTATACTGCGGTTTCCGACTTCAAGGAGCTGGCCCCACCCAGACGCTGGTAGCTTAATTGTGACATACATTGGCAGTGATTACAATCTTCATCACAGGATGCTTTCCCTTGATAATATTTACAGTTCTGATGAAACGGTGAGAAACATGAAACCTCTAGAAGATATGCTACTGGCAGAGCCCGAGCTCTCTCGACTTGGAAGCTTACTTCAAACACACTATGAACCTCGTCCCCAAGGGAAAGATGTGTTTGGCATTGCCCAATCTCTACATTATATTGGGGTGGAGTGTTGA 2028 40.93 MAENVSEDAHDYSLLKDLRLQIGVEDSSFSLCFWVYLMNSTPFPATIIGQVHSDITGSAPFLVLNEKKKMMLLPLLYLHREALYPGNSTSWTEVPSASAEVDFPLKRWVHVGCEVATDFMRLHIDGKIVGEKLLSSLSNNESDSNGSGRVTLVGIGGDDAVQGYIHNAKILPLTFSIKDHYVQDPPLQLSIDSSTALDIEEDSDGVWSIVGGKASCRRNFSLDVILLDALGQPVNKEIEVDASLLYADNGEPVEKPNDSEAPLLTSYDGIEFSSSDRPSKLSNGRASFKLKISQLSSKCDNRLFHIKFSIPKIGTYPFLETISHSIHCISRNRNTRPSLKRIKSGQEKSSATFMVNNVCQTHLEGRPENVEETENSSSHSESTEEGNPFFNNMSSYKNQISDLTIFKYCLGGNADRCLLLKEIASFASEQELEDFAQMVALYSGCSHHRCQIIITRKLIEEGTKAWNLISQNNHQVHWENVVFEIEELFMKIAHCSTRSLTHEDLELLRRISGCQEYLDRENFDKMWYWLYPVAFTLSRDWINATWCSASPKWIEGFVTKEEAESSLQGPRGLQQPGTFILRFPTSRSWPHPDAGSLIVTYIGSDYNLHHRMLSLDNIYSSDETVRNMKPLEDMLLAEPELSRLGSLLQTHYEPRPQGKDVFGIAQSLHYIGVEC* 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 114617 145720 + Vvi19g12 Vvi19g12 781511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g12 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 170 IPR013320 -
Vvi19g12 675 MobiDBLite consensus disorder prediction 364 388 - -
Vvi19g12 675 Gene3D - 9 181 - -
Vvi19g12 675 MobiDBLite consensus disorder prediction 365 379 - -
Vvi19g12 675 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 5 648 IPR001217 GO:0003700|GO:0006355|GO:0007165
Vvi19g12 675 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 5 648 - -
Vvi19g12 675 CDD SH2_SHA 542 651 - -
Vvi19g12 675 Gene3D SH2 domain 542 662 IPR036860 -
Vvi19g12 675 ProSiteProfiles Src homology 2 (SH2) domain profile. 553 635 IPR000980 -
Vvi19g12 675 SUPERFAMILY SH2 domain 550 660 IPR036860 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g12 - - - vvi:100260583 1235.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g12 . . . . Bpe09g00273 . . Bma13g00915 . . Cma01g01277 . Car01g01092 . . . Cpe02g00648 Bhi09g03581 Tan01g4242 . . . . . . . . . . . . . . . . Lsi04g01968 Csa04g02247 . . . Blo10g00716 . Bda12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14403 None None None None Vvi TF