Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g120 ATGAAAGATTTCACCGGAGGTATTGAATTTGACCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGCATGTTGCAATCTGGTTTGCCGTTGGATGATCGGCCTGAGGGGGCGAGGTCGCCTTCGCCTGAGCCTATATATGATAATATGGGAATTAGGATCAACACCAGAGAGTATCGGGCTCGCGAGAGATTGAATCGTGAGAGACAGGAAATTATATCACAAATCTTGAAACGAAACCCGGCATTTAAGCCCCCGGCTGATTATAGGCCCCCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCGGGCTATAACTTTATTGGGCTTATAATTGGACCAAGGGGGAACACACAGAAAAGAATGGAGAGGGAGACGGGGGCAAAAATTGTGATTCGGGGAAAAGGGTCAGTGAAAGAAGGGAGGTTGCAACAGAAGAGGGATTTAAAACCTGATCCTTCTGAGAACGAGGATTTGCATGTATTGGTTGAGGCGGATACACAGGAAGCACTTGATGCAGCTGCCGGGATGGTGGAGAAATTATTGCAGCCAGTTGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAGTTAGCAGCCCTAAATGGGACAATAAGGGATGAGGAGTACTGTAGATTGTGTGGAGAGCCGGGGCACCGGCAATATGCTTGGAAGAAAATGGATGATGAGTATCAGAACTTTTTGGCTGAGCTGGGAGGGACAGTACCAGATTCTTTGATAAAGCCAAACAATGCATTGCCAATTACAGGTTCAAGTGGTTCTGGAATATGA 816 45.47 MKDFTGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLNRERQEIISQILKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTQEALDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYAWKKMDDEYQNFLAELGGTVPDSLIKPNNALPITGSSGSGI* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1509613 1511168 + Vvi19g120 Vvi19g120 781619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g120 271 Gene3D - 11 88 - -
Vvi19g120 271 Pfam Splicing factor 1 helix-hairpin domain 14 93 IPR032570 -
Vvi19g120 271 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 233 260 - -
Vvi19g120 271 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 1 231 - -
Vvi19g120 271 Pfam KH domain 112 184 IPR004088 GO:0003723
Vvi19g120 271 Gene3D K Homology domain, type 1 89 220 IPR036612 GO:0003723
Vvi19g120 271 SMART kh_6 97 189 IPR004087 GO:0003676
Vvi19g120 271 CDD SF1_like-KH 98 214 - -
Vvi19g120 271 MobiDBLite consensus disorder prediction 142 162 - -
Vvi19g120 271 PANTHER RNA-BINDING PROTEIN RELATED 1 231 IPR045071 -
Vvi19g120 271 PANTHER RNA-BINDING PROTEIN RELATED 233 260 IPR045071 -
Vvi19g120 271 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 97 223 IPR036612 GO:0003723
Vvi19g120 271 ProSiteProfiles Type-1 KH domain profile. 112 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g120 K13095 SF1; splicing factor 1 - vvi:100267539 507.294
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g120 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008337 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35