Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g121 ATGGCGAACAGCAACCTTCCTCGCCGGATCATCAAGGAAACTCAACGTCTCCTTAGTGAACCAGCGCCGGGAATCAGTGCTTCGCCATCTGAAGACAATATGAGATATTTTAATGTCATGATCCTTGGTCCAACTCAATCTCCATATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTCTGCCTGAAGAATATCCAATGGCAGCTCCCAAGGTTCGTTTTCTCACCAAAATATATCATCCTAACATCGACAAGCTCGGAAGGATATGCCTTGATATCCTGAAAGACAAATGGAGCCCTGCTCTCCAGATTCGAACCGTACTCTTGAGCATTCAAGCACTACTAAGTGCTCCAAACCCGGATGATCCTCTTTCTGAGAACATTGCTAAGCATTGGAAGACAAACGAAGCTGAAGCTGTTGAAACAGCGAAGGAATGGACTCGCCTGTATGCAAGTGGCGCATGA 462 46.1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1528686 1547441 + Vvi19g121 Vvi19g121 781620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g121 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Vvi19g121 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Vvi19g121 153 SMART ubc_7 8 151 - -
Vvi19g121 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Vvi19g121 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
Vvi19g121 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Vvi19g121 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Vvi19g121 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Vvi19g121 153 CDD UBCc 7 146 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g121 K10580 UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] - thj:104813632 311.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g172 Vvi19g121 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g121 . . . . . . Bma10g00474 . Cmo16g00477 Cmo04g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00965 Blo10g00734 . Bda12g00818 . Bpe03g00854 . . . . . Cma04g00573 Cma16g00442 Car04g00543 . Cpe14g00372 Cpe01g00518 . . . . . . . . . . . . . . Lsi05g00796 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006747 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38