Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g122 ATGTCGCATTCCGGGAAACCCATGTCGGAGGTAGGGTTGGGTGCAGTGGCGGATCGGTTTCGGGAGACGTTAAACTGCGACAACAACAAGCCTGATTTTAAGGAACTCGATCTGGGCTCGCCGGTATCGCCGCTGCGGACTCGACGGAGTGGCCCGGCGGGGAGTGGAGTCACCACTACCAGCAGTAGCTCCAGTTCGTCCGGATCGGTCCGATTCCGGTGGCGCCCACCCGTTAATCTATTCCGGCGGTGGCTCCGTGAATTCTCCGTCCGTCAACGTTTTCCCGACGGGCAACATTTGTCCATCTGGGAAGATTTTGAAAACTGGCATGGCCAATCGGAGCTCGAGAAGCGACGTTTTGGGGTCCGGAATGGGCAATTATGGCCACGGCAGCATAATGCGGGGCGGCGCCGCCCCAAAATCCGGCGATCCTGGCAGGTGAAACAGGCCGGGAATGATCAATACAAAAGGGGCCATTTTCGAGAGGCATTGAGCTTTTACGATCGAGCAATTGCATTGTCTCCGGGAAATGCCGCTTACCACAGCAACCGGGCGGCGGCATTGACGGGTCTACACCGGTTGCCGGAGGCGGTGAGGGAATGTGAGGAGGCCGTGAGGTTGGATCCAGGTTCTGGGATTGGTTTCAGTCTTTTGCTAGAGGTTTTTTGTTTCTTGGCTCTCAAAAGTAAGAAAAAACTTGATACTCCATGCTTTAGTTTGTTGGATTTTCCTACATTTCTCGATAAGATAATTGCAATGTTAGGGCAAGTAGAAAATGCGAGGAGGCACCTTTTTGTTCCTGGGCAGCAACCTGATCCAGCAGAGTTACAGAAGTTACTAGAAGTAGAGAAGCATCTTAGTAAATGCTCTGATGCCCGGAGGATCGGTGATTGGAGGAGTGCATTGAGGGAAGGTGATGCTGCCATTGCTGCTGGAGCTGACTCTTCTCCCCAGATCTTTACGTGTAGAGTAGAAGCCCATTTAAAGCTCCATCAACTTGACGATGCAGAATCAAACTTATCATACATTCCCAAATCTGAACCATCAGGACAGTCATCCTCACAGGCTAAGTTTTTTGGGATGCTTTCTGAAGCTTACCTACATTTTGTTCAGGCCCAGATTGAGATGGCATTAGGAAGGTTTGAGAATGCAGTTACAGCTGTGGAGAAAGCTGGGCAGATTGATCCCCGCAATGTTGAAGTTGCTGTGCTTCTCAACAATGTGAGGATGGTTGCAAGAGCTCGTGCCCGTGGCAATGATCTCTTCAAATCTGAAAGGTTCACTGAAGCTTGCGCAGCATATGGTGAAGGCCTCAGGCTGGATCCTTCCAACTCTGTTCTTTATTGCAACAGAGCAGCTTGCTATTATAAGCTTGGAATGTGGGAACGATCTGTTGATGACTGCAATCAGGCCCTCTACATCCAACCCAATTACATGAAAGCTCTTCTCCGAAGGGCTGCCTCATACAGCAAGCTAGAAAGGTGGGTTGATGCTGTCAGAGATTATGAGCTTTTGAGGAGGGAACTCCCAAATGACAATGATGTAGCTGAGTCTCTATTCCATGCCCAAGTTGCATTGAAGAAATCGCGTGGGGAAGAAGTCTATAATATGAAGTTTGGTGGCGAAGTGGAGGACGTATCAAGTCTTGAGCAGTTCAAGTCTGCAATATCTTCACCTGGTGTGTCCATTGTCCTTTTCAAAGCAGCCACCAATCCGCAAAGCGAGCAGATATCTCCGTTTGTAGACACCCTTTGTGGTCGATACCCATCATTAAGTTTTCTCAAGGTTGATGTGGAACAGAGCCCAGCAATAGCAAGTGTAGAGAATGTCAGGATACTGCCAACATTCAAGATCTATAAAAATGGTAGCCGAGTGAAGGAAATCATCTGCCCTACTCGCGAAGTGTTGGAATCCTCGGTGAGACATTACGGTTTTTAG 1938 49.23 MSHSGKPMSEVGLGAVADRFRETLNCDNNKPDFKELDLGSPVSPLRTRRSGPAGSGVTTTSSSSSSSGSVRFRWRPPVNLFRRWLREFSVRQRFPDGQHLSIWEDFENWHGQSELEKRRFGVRNGQLWPRQHNAGRRRPKIRRSWQVKQAGNDQYKRGHFREALSFYDRAIALSPGNAAYHSNRAAALTGLHRLPEAVRECEEAVRLDPGSGIGFSLLLEVFCFLALKSKKKLDTPCFSLLDFPTFLDKIIAMLGQVENARRHLFVPGQQPDPAELQKLLEVEKHLSKCSDARRIGDWRSALREGDAAIAAGADSSPQIFTCRVEAHLKLHQLDDAESNLSYIPKSEPSGQSSSQAKFFGMLSEAYLHFVQAQIEMALGRFENAVTAVEKAGQIDPRNVEVAVLLNNVRMVARARARGNDLFKSERFTEACAAYGEGLRLDPSNSVLYCNRAACYYKLGMWERSVDDCNQALYIQPNYMKALLRRAASYSKLERWVDAVRDYELLRRELPNDNDVAESLFHAQVALKKSRGEEVYNMKFGGEVEDVSSLEQFKSAISSPGVSIVLFKAATNPQSEQISPFVDTLCGRYPSLSFLKVDVEQSPAIASVENVRILPTFKIYKNGSRVKEIICPTREVLESSVRHYGF* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1566159 1570486 - Vvi19g122 Vvi19g122 781621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g122 645 MobiDBLite consensus disorder prediction 31 71 - -
Vvi19g122 645 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 143 643 IPR044534 -
Vvi19g122 645 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 71 IPR044534 -
Vvi19g122 645 CDD TRX_family 550 640 - -
Vvi19g122 645 Pfam Tetratricopeptide repeat 447 478 IPR001440 GO:0005515
Vvi19g122 645 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
Vvi19g122 645 MobiDBLite consensus disorder prediction 52 71 - -
Vvi19g122 645 Gene3D Tetratricopeptide repeat domain 249 531 IPR011990 GO:0005515
Vvi19g122 645 SUPERFAMILY TPR-like 281 398 IPR011990 GO:0005515
Vvi19g122 645 Pfam Tetratricopeptide repeat 150 211 - -
Vvi19g122 645 SUPERFAMILY TPR-like 151 515 IPR011990 GO:0005515
Vvi19g122 645 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 15 71 - -
Vvi19g122 645 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 143 643 - -
Vvi19g122 645 Gene3D Tetratricopeptide repeat domain 144 229 IPR011990 GO:0005515
Vvi19g122 645 Pfam Thioredoxin 549 636 IPR013766 -
Vvi19g122 645 Gene3D Glutaredoxin 537 643 - -
Vvi19g122 645 ProSiteProfiles TPR repeat profile. 144 177 IPR019734 GO:0005515
Vvi19g122 645 SUPERFAMILY Thioredoxin-like 448 644 IPR036249 -
Vvi19g122 645 SMART tpr_5 445 478 IPR019734 GO:0005515
Vvi19g122 645 SMART tpr_5 479 512 IPR019734 GO:0005515
Vvi19g122 645 SMART tpr_5 178 211 IPR019734 GO:0005515
Vvi19g122 645 SMART tpr_5 365 398 IPR019734 GO:0005515
Vvi19g122 645 SMART tpr_5 144 177 IPR019734 GO:0005515
Vvi19g122 645 SMART tpr_5 411 444 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g122 - - - vvi:100255533 870.537
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g174 Vvi19g122 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38