Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g125 ATGTTATTGAGCAAAGAAATTGAGGATTTGCATGATGATGATTTTGAAGGGTCAAATGATGAGTGCCGTATTTTTAGAGAGGTTTTCTTTAGAAATAACACCGATAGTGCAAGTAAGAGGTTTCTCGTCACTGGATTTATTAACTTTGAATGTGAGGATAATAAGCAGACAGATACATCGCTCTGTTCAAATAGCGAAAACTCAGCAGTAACAAGAACTTCTGGTCCGGTGTCTTTTTCTGAGAGATTTACTTTGGTGGAAGGGAATGACCATGATGTAAATGTTAAGCGAATGAAGTTGTCAGATGATGAACTTTGTAACTTGAAACCTGATTTTGAGAAGTTTTTTGATTCATCAGCACCCTTGAAAGAAATTGTTTCTGGTATGTCCCCTCCTGCTTCTGAATCTGTTTATAAAAAGGTAAGATGCCATTTAGTTGAATCTTCGGATCAGGGTGTTAAATACCGTTGCTATCTGCTTAAGCGTCATCTGCAAATGGAGAGAGCATGTAGTTTCAGTGACCGGGATGCTATGAAGTGTAGATTATCCAGCTTAGATGGAAGTGATCGGAAGGAAGTTGTTGTAAGTAAAGCTATTGCTTCTCCTGTTTCTCAGGAGAGCTTTGCAACCAAGCTTTTGGTTGCAAGTCCACCCGTCGCTGTTGCTGATAAGTCTGGGCCTCCACTCTTTTCCGAGGACAGACCAAAGAAATCCGTCTTTCTAGAATTGGATGCGCTTTATGCATCTCCAAGTGTAGAATCTCTGAAGGATCCTCGTCCTCTTCTTCATGATCATATCAATCATGTGCTTATTGCAGCGGGTTGGTCTATTGAGAAGCGTAAAAGGAACAGTAGGCCTCATGAAGAGTCAGTTTATAGATCGCCAGAGGGGAGGCCGATTCGTGAATTTCCTAAGGCTTGGAGATTATGTGGTGAGAATTTATTTGCTGATAGATACAGTTTGGTACAGGAAAATGATGCTAAGGAATGGACTGATATCAGTCAATTCTGGTCTAATCTATCTAACGTATTGACATATATAGATAAAAAGATTAATGAAGCAGAAACTGCTATTACATTGGCTCATCGATGGAGTTTGTTAGATCCCTTCATAACTGTTGTGTTTATTGACAAGAAGATTGGTGCACTGAGAAAGGGAAACGCAGTTACAGCGAAAAGAAGTATAGTGGTTGAAAAGAAACAGAAAAATAATGCTGTTTTGGTCATGAAAGATGTGGGTTGCATAAAAAATCAGTTTGCACGGAGAGATCTTCCAGCTGCGATTTCTGATTCTTCTTTGGCCAGTGGAAGTGCATTGACTGTTTTTGAAGGGACTTATCATATGGCTGATGAAAAAGGTGAGCAATTTGGTGATGGAAGGCCCTTGAAATTTGATACTGTGGATGCAATGGCAAATCAGGGTGGGGGAATGCTAGAGAAAAAAAGAAGCAGTTTGGATCCGAGTTCTTTGCAAGCTTGTGTGTCAGATGGCATGTGTATCCAGTCTGGTAAGGGCCTTTATGATGTTCCCATTACTTCTGAAAATGTTGATGTTATGCGGTCTGAAACTGTCTCCCCTCATCAAGATAGTAACATGAATTCTCCAAGCTGTGATAAACAGATTTTAGATCATAATATGGAATTGTCTGTGGACATTGTTAAAGCTGCATCAAATGATATGTGGGACGAAAAAGATGAATGGCTGGAAGGCCTAGTCACTGATAAGATGCGCAGGAAGTCTAAAAAGATATCCGAAATCAAACTGAGCACATTATACAGAAATGAAATTTTAGGTCTGCCCTTGCCTAGTAGAGCTGAACTGCAGAATATCCACGAACATGACCCCGAGTTAGAGTCAGAAGAAATGGAGGAGTCCTTGATGGCCATTGCCAGAAACAATGGTGGTTGCAAAAGGTCCTCATCTCTCAGCTCTTCCCAGTGTCAAAGTGAAAGAAAACGGTCTAAGTTCAAAAAGTTCCACCACAGTGTTGATAGTTCGGGAGGATTGGTTCAAGTGGTTCATGATGGTGATTTTTCAGAGGAGTTCAACATTGAGAATAATACTAATAATGAATCTCTGCATGTAAATATTGGTTCTAAGCCTGAAACCAAATATGGAAATGGACAAAGGAATTCAAGCAGTTGCCAGATTGAAGATGATGATCTTTTGATTGCAGCTATTATACAAAACAGAAATGCCAGCTCCAGCACAAAGCGTCCAAGCTCAAAAATGAAGGTAAAAAAATCAAAAGCGCCGAATAAGCTCAAGAAAAGAAAGGGGAATTGCAAAACGGTGTTGTCCTGGTTAATAGATGCTGGTGTTATATCTTCCAATGATGTTATCCAGTACCGTAATCTCAAGGATAATGCTGTGGTGAAGGATGGTTATGTAACCCGTGACGGGATTGTTTGCAAATGTTGCACAGAGCTGTTTTCAGTTTGTAACTTCAAAATTCATGCTGGTTTCAAGTTGAATCGGCCCTGTCGCAACCTATTCATGGAGTCTGGCAAGTCATTCACTTTGTGCCAGCTTCAGGCCTGGTCTACTGAATATAAAGTTAGGAAAGGTGGCATAAAAAATGTACAAATTGATGAAATTGACCAAAATGACGATTCGTGTGGATTATGCGGGGATGGGGGTGAATTGATATGCTGTGATAACTGCCCATCTACTTTTCATCAGGCTTGCTTGTCTGCAAAGGAGCTCCCTGAAGGCAATTGGTATTGCCCAAACTGCACTTGCCGGATTTGTGGAGATTTGGTCAAGGACAGAGAGGCATCAAGTTCTTTTCTTGCATTAAAATGTTCCCAGTGCGAGCACAAATATCATATGCCATGCTTGAAAGAAAAGTGTGTAAAAGAAGTGGGTGGTGATGCTCGGTTTTGTGGTGAGAATTGCCAAGAGATCTACTCAGGTCTTCAGGGTCTCCTTGGGTTTGTCAACCATATTGCTGATGGCTTCACTTGGACACTCTTGAGATGCATCCATGATGACCAGAAGGTTCATTCTTCCCAAAAGCTTGCTCTGAAGGCCGAATGTAACTCAAAATTAGCTGTTGCTCTGACTATAATGGAGGAGTGCTTTTTGTCCATGGTGGATCCACGAACAGGGATAGACATGATACCCCATGTGTTATACAACCGGGGGTCAGATTTTGCACGTCTGAACTTTAATGGGTTTTACACAGTGGTTTTGGAGAAAGATGATGCGCTGGTATCTGTAGCATCTATCAGGGTACATGGAGTGACAGTTGCAGAGATGCCCCTGATTGCAACTTACGAAAAATTTCGTAGCAAGGGGATGTGTCGACTACTTATGAATGCCATTGAAAAGATGCTAAAATCTGTCAAGGTCGAAAAGATTGTGGTTGCTGCTATTCCAAGTTTGGTGGAGACGTGGACTCTGGGTTTTGGCTTCAAACCCGTGGAGGATGATGAAAAAGCAAGTCTGAAGAAAATCAACTTGATGGTGTTTCCTGGAACAATACTGCTGAAAAAGTCTTTGTATGAGAACCAAGAAACAGATAAACAAGCAGGAACAGATTGTGCGTTACCCTTAGAAGCGGCAAAACTGACTAAGTTGGATGCTAGTATCAAAGAAGAGTTAGTCATCGAGTCTGCACAACTATCTAATGCGAACTGTTGTGTTGAAGGAGGTGCTGAAATGGAGATTGGATGCCCCGACTCCCAGAATCTGCAAGTAGGTGAGTCTTATGAAGAACTGGCTTCAACAATAGTGGACAGCCAACTTGAACTGGCTCCCAATGTTGAATCTGAAAGTGTGTATGATGTGAGACAACTTTCTCCGATGGAACAGTCGCAGAAAGCCGATATGTTGGATGAGCAGCAGGAGTGGATCAAGACAAAACCCTCAATAAAACTTTGTTATTGTTTTTCTGGGTGA 3903 41.35 MLLSKEIEDLHDDDFEGSNDECRIFREVFFRNNTDSASKRFLVTGFINFECEDNKQTDTSLCSNSENSAVTRTSGPVSFSERFTLVEGNDHDVNVKRMKLSDDELCNLKPDFEKFFDSSAPLKEIVSGMSPPASESVYKKVRCHLVESSDQGVKYRCYLLKRHLQMERACSFSDRDAMKCRLSSLDGSDRKEVVVSKAIASPVSQESFATKLLVASPPVAVADKSGPPLFSEDRPKKSVFLELDALYASPSVESLKDPRPLLHDHINHVLIAAGWSIEKRKRNSRPHEESVYRSPEGRPIREFPKAWRLCGENLFADRYSLVQENDAKEWTDISQFWSNLSNVLTYIDKKINEAETAITLAHRWSLLDPFITVVFIDKKIGALRKGNAVTAKRSIVVEKKQKNNAVLVMKDVGCIKNQFARRDLPAAISDSSLASGSALTVFEGTYHMADEKGEQFGDGRPLKFDTVDAMANQGGGMLEKKRSSLDPSSLQACVSDGMCIQSGKGLYDVPITSENVDVMRSETVSPHQDSNMNSPSCDKQILDHNMELSVDIVKAASNDMWDEKDEWLEGLVTDKMRRKSKKISEIKLSTLYRNEILGLPLPSRAELQNIHEHDPELESEEMEESLMAIARNNGGCKRSSSLSSSQCQSERKRSKFKKFHHSVDSSGGLVQVVHDGDFSEEFNIENNTNNESLHVNIGSKPETKYGNGQRNSSSCQIEDDDLLIAAIIQNRNASSSTKRPSSKMKVKKSKAPNKLKKRKGNCKTVLSWLIDAGVISSNDVIQYRNLKDNAVVKDGYVTRDGIVCKCCTELFSVCNFKIHAGFKLNRPCRNLFMESGKSFTLCQLQAWSTEYKVRKGGIKNVQIDEIDQNDDSCGLCGDGGELICCDNCPSTFHQACLSAKELPEGNWYCPNCTCRICGDLVKDREASSSFLALKCSQCEHKYHMPCLKEKCVKEVGGDARFCGENCQEIYSGLQGLLGFVNHIADGFTWTLLRCIHDDQKVHSSQKLALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHVLYNRGSDFARLNFNGFYTVVLEKDDALVSVASIRVHGVTVAEMPLIATYEKFRSKGMCRLLMNAIEKMLKSVKVEKIVVAAIPSLVETWTLGFGFKPVEDDEKASLKKINLMVFPGTILLKKSLYENQETDKQAGTDCALPLEAAKLTKLDASIKEELVIESAQLSNANCCVEGGAEMEIGCPDSQNLQVGESYEELASTIVDSQLELAPNVESESVYDVRQLSPMEQSQKADMLDEQQEWIKTKPSIKLCYCFSG* 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1594073 1612711 - Vvi19g125 Vvi19g125 781624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g125 1300 CDD PHD2_CHD_II 872 912 - -
Vvi19g125 1300 Pfam PHD-finger 873 914 IPR019787 -
Vvi19g125 1300 MobiDBLite consensus disorder prediction 732 753 - -
Vvi19g125 1300 CDD NAT_SF 1063 1123 - -
Vvi19g125 1300 Pfam Tify domain binding domain 795 845 IPR032308 -
Vvi19g125 1300 SUPERFAMILY FYVE/PHD zinc finger 854 913 IPR011011 -
Vvi19g125 1300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 858 932 IPR013083 -
Vvi19g125 1300 ProSiteProfiles Zinc finger PHD-type profile. 870 915 IPR019787 -
Vvi19g125 1300 PANTHER PHD FINGER FAMILY PROTEIN 5 1208 - -
Vvi19g125 1300 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1019 1169 IPR000182 GO:0016407
Vvi19g125 1300 PANTHER INCREASED DNA METHYLATION 1 5 1208 IPR031086 -
Vvi19g125 1300 Gene3D - 1043 1155 - -
Vvi19g125 1300 SMART PHD_3 914 967 IPR001965 -
Vvi19g125 1300 SMART PHD_3 872 913 IPR001965 -
Vvi19g125 1300 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1022 1144 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g125 - - - vvi:100248637 1374.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14404 PF16135 TDBD 7.40E-17 No_clan Vvi TR