Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g126 ATGGGTTCTTCTTCTCGTAAGGTTTTGGTTCCGATCGCCCACGGCTCGGAGCCGATGGAGGCGGTGATCATCATCGATGTGCTCCGGCGAGCTGGCGCCGATGTGACCGTCGCTTCTGTGGAGAAGCGGCTTCAAGTTGATGCGTGCCATGGCGTGAAGATTGTTGCGGATGCCCTAATTTCTGACTGCGCTGATACTGGTTTCGATCTCATTTCGCTGCCGGGAGGAATGCCAGGTGCTGCCACTCTCAGAGATTGTGGCATGCTGGAAAGCATGGTAAAGAAGCATGCTGCTGATGGGCAGCTCTATGCTGGAATCTGTGCGGCACCTGCTGTGGCACTTGGATCATGGGGCTTGATGAAAGGTTTGAAGGCAACCTGTTATCCATCATTCATGGAGCAATTGTCTTCCACTGCAACTACAGTTGAATCAAGAGTCCAACAGGATGGCAAAGTTGTGACGAGTCGTGGACCAGGCACTACTATGGAGTTCTCAGTCTCTTTGGTTGAGCAATTATATGGAAAAGAGAAAGCTAATGAAGTTTCTGGGCCACTGGTGATGTGTTCCAATCTTGGGGATAAATTCATCATGGCTGAGCTAAATCCGATTGATTGGAAGTGTGACAATCCTCAGATTCTTGTGCCTATTGCTAATGGCACAGAAGAAATGGAAGCTGTTATAATCATTGATTTTCTGCGTCGAGCAAAGGCAAATGTTGTGGTGGCCTCTGTTGAAGACAAATTAGAAATTGTGGCTTCACGAAAAGTGAAACTAGTGGCAGATGTGCTTCTTGATGAAGCTGTTAAACTTTCATATGACCTAATCGTCTTGCCAGGTGGACTAGGTGGTGCCCAAGCATTTGCCAGCTCAGAAAAACTGGTGAATTTGCTAAAGAATCAGAGGGAGTCAAATAAACCATATGGAGCAATATGTGCATCCCCAGCTCTCGTCCTGGAGCCCCATGGCTTACTCAAGGGCAAGAAGGCCACAGCTTTTCCTGCACTATGTAGCAAGCTGTCCGATCAGAGTGAAATCGAGAACAGGGTTCTGGTTGATGGCAACCTCATTACCAGCAGAGGCCCCGGAACTTCCATGGAGTTTGCACTGGCAATCATTGAGAAGTTCTTTGGCCACGGTAAAGCACTAGAGCTTGCAAAGGTAATGCTTTTCTCAAGCCAGTAA 1182 48.14 MGSSSRKVLVPIAHGSEPMEAVIIIDVLRRAGADVTVASVEKRLQVDACHGVKIVADALISDCADTGFDLISLPGGMPGAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLSSTATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVMCSNLGDKFIMAELNPIDWKCDNPQILVPIANGTEEMEAVIIIDFLRRAKANVVVASVEDKLEIVASRKVKLVADVLLDEAVKLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALVLEPHGLLKGKKATAFPALCSKLSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFGHGKALELAKVMLFSSQ* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1617110 1624853 + Vvi19g126 Vvi19g126 781625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g126 393 CDD GATase1_DJ-1 212 375 - -
Vvi19g126 393 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 3 389 - -
Vvi19g126 393 PANTHER BNAA06G01020D PROTEIN 3 389 - -
Vvi19g126 393 SUPERFAMILY Class I glutamine amidotransferase-like 211 390 IPR029062 -
Vvi19g126 393 Gene3D - 205 393 IPR029062 -
Vvi19g126 393 Gene3D - 2 195 IPR029062 -
Vvi19g126 393 SUPERFAMILY Class I glutamine amidotransferase-like 6 187 IPR029062 -
Vvi19g126 393 TIGRFAM not_thiJ: DJ-1 family protein 212 386 IPR006287 -
Vvi19g126 393 TIGRFAM not_thiJ: DJ-1 family protein 7 182 IPR006287 -
Vvi19g126 393 Pfam DJ-1/PfpI family 211 373 IPR002818 -
Vvi19g126 393 Pfam DJ-1/PfpI family 6 171 IPR002818 -
Vvi19g126 393 CDD GATase1_DJ-1 8 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g126 K03152 thiJ; protein deglycase [EC:3.5.1.124] - vvi:100253735 763.451
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g126 . . . . Bpe09g00256 . . Bma13g00931 . Cmo04g00612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00736 . . . . . . . . . Cma04g00572 . Car04g00542 . . Cpe01g00517 . . . . . . . . . . . . . . . Csa04g00801 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012103 0 3 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29