Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g127 ATGACTTGTTTCTCTTTCTGTTTTAGAAAGAAGGTAGCTTCTTCAATTACACGAACAGCAGAAGTTGATGACGTGGTTTCAGGAATCCAGAATGTCAATAGGTACAGTTACAGAGAATTGCGAATTGCCACACAGGATTTTAGTCTGGCTAATAAAATTGGGGAGGGAGGTTTTGGTTCCGTCTACAAGGGAACACTCAGAGATGGCACCGTTGTGGCCATAAAGGTGCTTTCAGCTCAGTCACGGCAAGGATTACGAGAATTTTTGACAGAGTTAAGTGTGATCTCAGTAATTGAGCATGAAAACCTTGTAGAGTTGTATGGTTGTTGTGTTGACGAGGATCAAAGAATCTTGGTCTATGGCTATCTTGAGAATAATAGCCTTGCACAAACTCTTTTGGATGGAGGACACAGTGGCATCCAATTTAGTTGGAAAACCCGAACAAAAATTTGCATTGGTGTTGCAAGGGGGCTTGCATTTCTTCATGAGGAGGTCCATCCGCATATTGTTCATAGAGATATCAAAGCAAGCAATATCCTCCTTGACAAAGACCTGACTCCCAAAATCTCTGATTTTGGTCTAGCAAAGCTCATTCCAGAAGACCAGACTCATGTTAGTACACGTGTTGCTGGAACAACAGGTTATTTGGCCCCTGAGTATGCAATAAGAGGTCAGCTGACGAGGAAAGCAGATATTTACAGTTTTGGTGTTCTCCTCTTGGAAATTGTTTGTGGGAGAAGCAACAAGAATACACGGTTAGCTTATGGGGAACATTTTCTTCTTGAAATGGTATGGGAGCTTCATGAGAGAAGGGAGCTAGCAGATGCAGTGGACACATCATTGAATGGGGATTTCGACATTGAGGAGGTTTGCAGATTCCTCAAGATTGGTCTGCTCTGCACCCAAGACATGCCAAAATCCCGGCCAACCATGTCTACTGTGGTCAGCATGCTAACAGGAGAGGCAGATGTGGATGACAATATATCCAGACCTGGCCTCATTTCTGAGCTCATGGGCATTAAAGTTGGAGGTGCCCAGAGATACAAGTCTGATACAGCATCTGGCTCAGGCAAGCTGGACAATTCATCATTGTCATCAGGAATGCCCACTTCAATTGCCACAATGACCTTCAATTCAATATATGATCGAAGCGGGTAA 1158 43.61 MTCFSFCFRKKVASSITRTAEVDDVVSGIQNVNRYSYRELRIATQDFSLANKIGEGGFGSVYKGTLRDGTVVAIKVLSAQSRQGLREFLTELSVISVIEHENLVELYGCCVDEDQRILVYGYLENNSLAQTLLDGGHSGIQFSWKTRTKICIGVARGLAFLHEEVHPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPEDQTHVSTRVAGTTGYLAPEYAIRGQLTRKADIYSFGVLLLEIVCGRSNKNTRLAYGEHFLLEMVWELHERRELADAVDTSLNGDFDIEEVCRFLKIGLLCTQDMPKSRPTMSTVVSMLTGEADVDDNISRPGLISELMGIKVGGAQRYKSDTASGSGKLDNSSLSSGMPTSIATMTFNSIYDRSG* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1629916 1636613 + Vvi19g127 Vvi19g127 781626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g127 385 CDD STKc_IRAK 53 320 - -
Vvi19g127 385 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g127 385 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 2 368 - -
Vvi19g127 385 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Vvi19g127 385 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vvi19g127 385 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Vvi19g127 385 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g127 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vvi19g127 385 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Vvi19g127 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 368 - -
Vvi19g127 385 Pfam Protein tyrosine and serine/threonine kinase 49 318 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76413 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g127 - - vvi:100260593 763.066