Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g127 | ATGACTTGTTTCTCTTTCTGTTTTAGAAAGAAGGTAGCTTCTTCAATTACACGAACAGCAGAAGTTGATGACGTGGTTTCAGGAATCCAGAATGTCAATAGGTACAGTTACAGAGAATTGCGAATTGCCACACAGGATTTTAGTCTGGCTAATAAAATTGGGGAGGGAGGTTTTGGTTCCGTCTACAAGGGAACACTCAGAGATGGCACCGTTGTGGCCATAAAGGTGCTTTCAGCTCAGTCACGGCAAGGATTACGAGAATTTTTGACAGAGTTAAGTGTGATCTCAGTAATTGAGCATGAAAACCTTGTAGAGTTGTATGGTTGTTGTGTTGACGAGGATCAAAGAATCTTGGTCTATGGCTATCTTGAGAATAATAGCCTTGCACAAACTCTTTTGGATGGAGGACACAGTGGCATCCAATTTAGTTGGAAAACCCGAACAAAAATTTGCATTGGTGTTGCAAGGGGGCTTGCATTTCTTCATGAGGAGGTCCATCCGCATATTGTTCATAGAGATATCAAAGCAAGCAATATCCTCCTTGACAAAGACCTGACTCCCAAAATCTCTGATTTTGGTCTAGCAAAGCTCATTCCAGAAGACCAGACTCATGTTAGTACACGTGTTGCTGGAACAACAGGTTATTTGGCCCCTGAGTATGCAATAAGAGGTCAGCTGACGAGGAAAGCAGATATTTACAGTTTTGGTGTTCTCCTCTTGGAAATTGTTTGTGGGAGAAGCAACAAGAATACACGGTTAGCTTATGGGGAACATTTTCTTCTTGAAATGGTATGGGAGCTTCATGAGAGAAGGGAGCTAGCAGATGCAGTGGACACATCATTGAATGGGGATTTCGACATTGAGGAGGTTTGCAGATTCCTCAAGATTGGTCTGCTCTGCACCCAAGACATGCCAAAATCCCGGCCAACCATGTCTACTGTGGTCAGCATGCTAACAGGAGAGGCAGATGTGGATGACAATATATCCAGACCTGGCCTCATTTCTGAGCTCATGGGCATTAAAGTTGGAGGTGCCCAGAGATACAAGTCTGATACAGCATCTGGCTCAGGCAAGCTGGACAATTCATCATTGTCATCAGGAATGCCCACTTCAATTGCCACAATGACCTTCAATTCAATATATGATCGAAGCGGGTAA | 1158 | 43.61 | MTCFSFCFRKKVASSITRTAEVDDVVSGIQNVNRYSYRELRIATQDFSLANKIGEGGFGSVYKGTLRDGTVVAIKVLSAQSRQGLREFLTELSVISVIEHENLVELYGCCVDEDQRILVYGYLENNSLAQTLLDGGHSGIQFSWKTRTKICIGVARGLAFLHEEVHPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPEDQTHVSTRVAGTTGYLAPEYAIRGQLTRKADIYSFGVLLLEIVCGRSNKNTRLAYGEHFLLEMVWELHERRELADAVDTSLNGDFDIEEVCRFLKIGLLCTQDMPKSRPTMSTVVSMLTGEADVDDNISRPGLISELMGIKVGGAQRYKSDTASGSGKLDNSSLSSGMPTSIATMTFNSIYDRSG* | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1629916 | 1636613 | + | Vvi19g127 | Vvi19g127 | 781626 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g127 | 385 | CDD | STKc_IRAK | 53 | 320 | - | - | |
Vvi19g127 | 385 | ProSiteProfiles | Protein kinase domain profile. | 47 | 333 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi19g127 | 385 | PANTHER | SERINE/THREONINE-PROTEIN KINASE-RELATED | 2 | 368 | - | - | |
Vvi19g127 | 385 | Gene3D | Phosphorylase Kinase; domain 1 | 17 | 122 | - | - | |
Vvi19g127 | 385 | ProSitePatterns | Protein kinases ATP-binding region signature. | 53 | 75 | IPR017441 | GO:0005524 | |
Vvi19g127 | 385 | Gene3D | Transferase(Phosphotransferase) domain 1 | 123 | 330 | - | - | |
Vvi19g127 | 385 | SMART | serkin_6 | 47 | 318 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi19g127 | 385 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 169 | 181 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi19g127 | 385 | SUPERFAMILY | Protein kinase-like (PK-like) | 26 | 318 | IPR011009 | - | |
Vvi19g127 | 385 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 2 | 368 | - | - | |
Vvi19g127 | 385 | Pfam | Protein tyrosine and serine/threonine kinase | 49 | 318 | IPR001245 | GO:0004672|GO:0006468 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76413 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-47 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g127 | - | - | vvi:100260593 | 763.066 |