Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g137 ATGGCTTCAGAGCCATTAGGCGGTGGGGGCGGCGATTCGAGAGAGAAACAGAAGTGGGCAGAGAGCGGCAAAGTCTATAAGCGCAAAAACCATAACAAAGGCATCAAAATCAACAACGAGAGCAGCATCATTAACAACAACATCAGGTTTCGTTCGATTTCGATGAGATCGAAAGTGGAGAAAAGGGATTTGAGGAGGAAACTTTTGGGTGAGCTTGATCAAGTGAGAAGTTTGGCGAAGAAACTAGACACTAACGACGGTCAGCTTAGTGGGTATGCGCATTCGCAGGTGTCGGGTAACGATGGGCTTGATAGAGGTGGAGGTGCATTGAGGGTGAATTCGGAGGTGGGTTCTGTGGGGTATGTGGCTCAAGCATTCAAGAATTGTAGTAATTTGCTTGCAAAGTTGATGAAGCACAAGCATGGTTGGGTGTTTAACAATCCGGTTGACGTGAAGGGGCTCGGATTACATGATTATTATTCAATTATAAAACACCCGATGGATTTTGGTACAGTGAAGAGTAGGTTAAGCAAGAATTGGTATAAGTCCCCAAGGGAATTTGCCGAGGATGTCAGACTCACATTGCAAAATGCCATGACTTATAACCCCAAAGGACAGGATGTTCACTGCATGGCAGAGGAGTTGCTGAAAATATTTGAGGAGAAGTGGGCGGCTATTGAGGCCGACCTTTACTGGAGGTTTGGGATGGGCCATGATGCTGGAACACCCACGCCCACTTCAAGGAAGGCTCCTTATCTTCATCATCATCATTCTCCAGAAATGAGGACTGTGGATAGGTCCGGGTCTATGGCAATGCCTATTGATTCCAATTTGAAACCTGGAAATTTTGCTCATATGAGGATGCCAGTCCCAAAGAAACCCAAAGCAAAGGATCCCCATAAGAGGGATATGACATATGAGGAGAAGCAGAAGCTTAGCTCAAACCTCCAAAGCTTGCCATCAGAAAAGCTGGATCATATTGTTCAGATTATCAAGAAGAGGAATTCAGCTGTTAGTCAACAAGATGATGAGATTGAAGTGGACATAGACAGTGTTGATGCTGAAACACTTTGGGAACTTGATAGGTATGTAACTAATTATAAGAAGAGTTTGAGCAAGAACAAGAGAAAAGCTGAACTTGCTTTCCAGGCAAGAGCAAATAGTGACCACAATATCCAGGAAATGTACTCGTCCTCAGCCACAGCAGGAGCACCAAAAGAAACTAAATCAGATGGAGAACATGTTTCCGCTTCTCCCATTCAAGCAGAAAAGCAAGGTGATAATGCAGGGGGAGGATCAAGTAGTTCGAGTTCAAGCAGTGATTCTGGATCTTCTTCAAGTGATTCTGACAGTGAAAGTTCTTCTGCATATGGATCAGATGCAGGTCATTCACCTAAGAATTGA 1404 44.37 MASEPLGGGGGDSREKQKWAESGKVYKRKNHNKGIKINNESSIINNNIRFRSISMRSKVEKRDLRRKLLGELDQVRSLAKKLDTNDGQLSGYAHSQVSGNDGLDRGGGALRVNSEVGSVGYVAQAFKNCSNLLAKLMKHKHGWVFNNPVDVKGLGLHDYYSIIKHPMDFGTVKSRLSKNWYKSPREFAEDVRLTLQNAMTYNPKGQDVHCMAEELLKIFEEKWAAIEADLYWRFGMGHDAGTPTPTSRKAPYLHHHHSPEMRTVDRSGSMAMPIDSNLKPGNFAHMRMPVPKKPKAKDPHKRDMTYEEKQKLSSNLQSLPSEKLDHIVQIIKKRNSAVSQQDDEIEVDIDSVDAETLWELDRYVTNYKKSLSKNKRKAELAFQARANSDHNIQEMYSSSATAGAPKETKSDGEHVSASPIQAEKQGDNAGGGSSSSSSSSDSGSSSSDSDSESSSAYGSDAGHSPKN* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1739219 1741641 - Vvi19g137 Vvi19g137 781636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g137 467 MobiDBLite consensus disorder prediction 280 315 - -
Vvi19g137 467 MobiDBLite consensus disorder prediction 421 461 - -
Vvi19g137 467 ProSiteProfiles Bromodomain profile. 137 209 IPR001487 GO:0005515
Vvi19g137 467 PRINTS Bromodomain signature 172 190 IPR001487 GO:0005515
Vvi19g137 467 PRINTS Bromodomain signature 156 172 IPR001487 GO:0005515
Vvi19g137 467 PRINTS Bromodomain signature 190 209 IPR001487 GO:0005515
Vvi19g137 467 PRINTS Bromodomain signature 140 153 IPR001487 GO:0005515
Vvi19g137 467 SUPERFAMILY Bromodomain 123 230 IPR036427 GO:0005515
Vvi19g137 467 PANTHER PROTEIN, PUTATIVE-RELATED 117 461 - -
Vvi19g137 467 MobiDBLite consensus disorder prediction 397 467 - -
Vvi19g137 467 Pfam Bromodomain 129 213 IPR001487 GO:0005515
Vvi19g137 467 PANTHER OSJNBA0053K19.4 PROTEIN 117 461 - -
Vvi19g137 467 MobiDBLite consensus disorder prediction 1 23 - -
Vvi19g137 467 Gene3D - 122 230 IPR036427 GO:0005515
Vvi19g137 467 Gene3D - 297 378 IPR038336 -
Vvi19g137 467 Pfam Bromodomain extra-terminal - transcription regulation 304 365 IPR027353 -
Vvi19g137 467 PANTHER OSJNBA0053K19.4 PROTEIN 1 93 - -
Vvi19g137 467 SMART bromo_6 122 228 IPR001487 GO:0005515
Vvi19g137 467 CDD Bromo_plant1 125 223 IPR037377 -
Vvi19g137 467 ProSiteProfiles NET domain profile. 294 375 IPR027353 -
Vvi19g137 467 MobiDBLite consensus disorder prediction 291 309 - -
Vvi19g137 467 PANTHER PROTEIN, PUTATIVE-RELATED 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g137 - - - vvi:100255658 657.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g202 Vvi19g137 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48