Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g139 ATGGCCATCATCTCCATCATCAATATCCTCAAACCCAACATTTCGTCGTCGTCGAGAATGGGGATGAGGAGCGTGGTCGGCGGCGAGATTGTGGAGGTTCAAGGCGGCCACATTGTCCGCTCCACCGGCAGAAAAGACCGCCACAGCAAGGTGTGCACCGCCAAAGGCCCCAGAGACCGCCGCGTTCGCCTCTCCGCCCACACTGCCATCCAATTCTACGACGTCCAGGACCGCCTCGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAGGCCAAAGCCGCCATCGACGAGCTCGCTCAACTCCCAGCTTGGCATCCCACTGCCATCACCGTCACCGCGGCCGCCGCTGCTGCTACCACCGCAACCACCACCCACCACCAGGAAGACGAAGAAAATCCCAACCAGGTCGCCATTGATGGCGACGATGATCGTGTGCAAATGCATCACGGCAACAATCCGGACCCCAACCCCAATCCTAACCCTAACCAAAACCCTAGTTTTCTTCCGCCATCGTTAGACTCTGATACCATTGCGGACACAATCAAGAGCTTTTTTCCCATGGGTGCTTCTGGGGAATCCTCGTCTTCGTCCGTACAGTTTCAGAGCTACCCGCCCGATTTGCTCTCGAGAACCAGTAGTCAGAATCAAGATCTTCGCCTTTCGCTTCAGAGCTTCCAAGACCCTATGCTTCTTCATCATCACCACACCCAGAGCCACTCTCATCATCAACAACAAGCCCTTTTTTCGCCGTTAGGCTTCGACGCCCCCTCCGCCGCTTGGTCCGAGCACCACGCAGCGGAGATGGGGCGCCATTGTTTTGCCAAAGCCAGATGTATTCTCAGAGGGGACCCCTTCAGTCCAGCAACACGCCTTCGATTCGCGCTTGGATAG 903 57.03 MAIISIINILKPNISSSSRMGMRSVVGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPAWHPTAITVTAAAAAATTATTTHHQEDEENPNQVAIDGDDDRVQMHHGNNPDPNPNPNPNQNPSFLPPSLDSDTIADTIKSFFPMGASGESSSSSVQFQSYPPDLLSRTSSQNQDLRLSLQSFQDPMLLHHHHTQSHSHHQQQALFSPLGFDAPSAAWSEHHAAEMGRHCFAKARCILRGDPFSPATRLRFALG* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1804593 1806793 + Vvi19g139 Vvi19g139 781638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g139 300 Pfam TCP family transcription factor 43 147 IPR017887 -
Vvi19g139 300 PANTHER TRANSCRIPTION FACTOR TCP4 15 274 - -
Vvi19g139 300 MobiDBLite consensus disorder prediction 124 177 - -
Vvi19g139 300 ProSiteProfiles TCP domain profile. 44 102 IPR017887 -
Vvi19g139 300 MobiDBLite consensus disorder prediction 128 153 - -
Vvi19g139 300 MobiDBLite consensus disorder prediction 195 219 - -
Vvi19g139 300 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 274 IPR005333 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g203 Vvi19g139 ECH
Vvi10g184 Vvi19g139 ECH
Vvi10g460 Vvi19g139 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14405 PF03634 TCP 1.20E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g139 - - vvi:100248756 431.024