Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g139 | ATGGCCATCATCTCCATCATCAATATCCTCAAACCCAACATTTCGTCGTCGTCGAGAATGGGGATGAGGAGCGTGGTCGGCGGCGAGATTGTGGAGGTTCAAGGCGGCCACATTGTCCGCTCCACCGGCAGAAAAGACCGCCACAGCAAGGTGTGCACCGCCAAAGGCCCCAGAGACCGCCGCGTTCGCCTCTCCGCCCACACTGCCATCCAATTCTACGACGTCCAGGACCGCCTCGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAGGCCAAAGCCGCCATCGACGAGCTCGCTCAACTCCCAGCTTGGCATCCCACTGCCATCACCGTCACCGCGGCCGCCGCTGCTGCTACCACCGCAACCACCACCCACCACCAGGAAGACGAAGAAAATCCCAACCAGGTCGCCATTGATGGCGACGATGATCGTGTGCAAATGCATCACGGCAACAATCCGGACCCCAACCCCAATCCTAACCCTAACCAAAACCCTAGTTTTCTTCCGCCATCGTTAGACTCTGATACCATTGCGGACACAATCAAGAGCTTTTTTCCCATGGGTGCTTCTGGGGAATCCTCGTCTTCGTCCGTACAGTTTCAGAGCTACCCGCCCGATTTGCTCTCGAGAACCAGTAGTCAGAATCAAGATCTTCGCCTTTCGCTTCAGAGCTTCCAAGACCCTATGCTTCTTCATCATCACCACACCCAGAGCCACTCTCATCATCAACAACAAGCCCTTTTTTCGCCGTTAGGCTTCGACGCCCCCTCCGCCGCTTGGTCCGAGCACCACGCAGCGGAGATGGGGCGCCATTGTTTTGCCAAAGCCAGATGTATTCTCAGAGGGGACCCCTTCAGTCCAGCAACACGCCTTCGATTCGCGCTTGGATAG | 903 | 57.03 | MAIISIINILKPNISSSSRMGMRSVVGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPAWHPTAITVTAAAAAATTATTTHHQEDEENPNQVAIDGDDDRVQMHHGNNPDPNPNPNPNQNPSFLPPSLDSDTIADTIKSFFPMGASGESSSSSVQFQSYPPDLLSRTSSQNQDLRLSLQSFQDPMLLHHHHTQSHSHHQQQALFSPLGFDAPSAAWSEHHAAEMGRHCFAKARCILRGDPFSPATRLRFALG* | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1804593 | 1806793 | + | Vvi19g139 | Vvi19g139 | 781638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g139 | 300 | Pfam | TCP family transcription factor | 43 | 147 | IPR017887 | - | |
Vvi19g139 | 300 | PANTHER | TRANSCRIPTION FACTOR TCP4 | 15 | 274 | - | - | |
Vvi19g139 | 300 | MobiDBLite | consensus disorder prediction | 124 | 177 | - | - | |
Vvi19g139 | 300 | ProSiteProfiles | TCP domain profile. | 44 | 102 | IPR017887 | - | |
Vvi19g139 | 300 | MobiDBLite | consensus disorder prediction | 128 | 153 | - | - | |
Vvi19g139 | 300 | MobiDBLite | consensus disorder prediction | 195 | 219 | - | - | |
Vvi19g139 | 300 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 15 | 274 | IPR005333 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi12g203 | Vvi19g139 | ECH | |
Vvi10g184 | Vvi19g139 | ECH | |
Vvi10g460 | Vvi19g139 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14405 | PF03634 | TCP | 1.20E-30 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g139 | - | - | vvi:100248756 | 431.024 |