Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g14 ATGCTGGGCGCCCTCGGCTGCGGGGGACTTGATTATCTGGGCAATCCTAACCTGGGGTACAGAATTGGCGGTGGACCGCTAGGAGAAGTGAAGGAGATAAAGAATGGGAGGTTGGCTATGTTCTCCATGTTCGGGTTCTTTGTGCAGGCCATAGTGACTGGGAAGGGGCCATTGGAGAACCTGGCTGATCACTTGGCTGACCCTGTTAACAACAATGCTTGGGCTTATGCCACCAACTTTGTCCCTGGAAAGTGA 255 53.33 MLGALGCGGLDYLGNPNLGYRIGGGPLGEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 85
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 150326 151494 - Vvi19g14 Vvi19g14 781513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g14 84 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 30 84 - -
Vvi19g14 84 SUPERFAMILY Chlorophyll a-b binding protein 1 81 - -
Vvi19g14 84 Gene3D Chlorophyll a/b binding protein domain 26 77 - -
Vvi19g14 84 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 30 84 IPR001344 GO:0009765|GO:0016020
Vvi19g14 84 Pfam Chlorophyll A-B binding protein 30 50 IPR022796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g14 K08912 LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1 - vvi:100245214 137.502
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g14 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025113 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2