Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g140 ATGGGTGCGGGAGGCTGGTTTAAGATGATAATTAGCCTAAGGAAAGTGAAGGAAGATAGATCTAAACCAGCAAAGGTGCACTCAACCACCGAAAAATCAAGCAACTCCAAGGGGAAGCACCATATTGATAAGGAGTCGAGCAGTCTTGCCAATGGCGCTTTGGGTAAAAGTGCCGGTGTTCATAAGATTCCAGTTGAGGAGAGAGCTGCAATTCAAATTCAAACAACATACCGGGCATATAAGGCAAGAAAAAACCTGCACCGTTTGAGAGGGACAGTGAGATTTCAGGTGATGACACAAGGCGATATTGTTAGGAAGCAGGCTTCAACCACATTGAGCTACATACATGCATGGAGCAGAATACAGGCTCAGATTAGTGCCAGGCGGCATTGTATGGCTCAAGAAGGTCGGGTTAGGCAGAAGAAACTTGAGAATCAGTTGAAACTTGAGGCAAAGCTGCATGAGCTAGAGGTGGAATGGTGTGGTGGCTCTGAAACCATGGAGGAAATCCTTTCGAGGATACAGCAGAGGGAAGAAGCAGCAGTTAAGCGTGAGAGAGCCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACAATAGTCAGTATCTGGGCCACACTTATTATGATCTCGGCAAAGAAAACTGGGGTTGGAGCTGGATGGAGCGCTGGATAGCTGCTCGACCATGGGAGACTCGGGTTCATGCTCAGTCAACTCTTCCAAAGAAAGCTCAAACCAAGCATGTGATCAAGGTAGGAAAAATTACAAACCCACAGACAATGAAAACTCCAGTTCTAGTCAGGCCTGCTTTGTCTAATGGGAAGGGAACTACAAAGCCAGCTGCCCAAGAAGCAGTGACCACTGCAGTCAGCTCTTCTCGGTCTGAAGCTGAAGAAGCAAACACCAAACATGAACAAATTATCACTTAG 930 46.99 MGAGGWFKMIISLRKVKEDRSKPAKVHSTTEKSSNSKGKHHIDKESSSLANGALGKSAGVHKIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSYIHAWSRIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEVEWCGGSETMEEILSRIQQREEAAVKRERAMAYAFSHQWRANNSQYLGHTYYDLGKENWGWSWMERWIAARPWETRVHAQSTLPKKAQTKHVIKVGKITNPQTMKTPVLVRPALSNGKGTTKPAAQEAVTTAVSSSRSEAEEANTKHEQIIT* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1809113 1811504 - Vvi19g140 Vvi19g140 781639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g140 309 SMART iq_5 65 87 IPR000048 GO:0005515
Vvi19g140 309 Pfam IQ calmodulin-binding motif 67 86 IPR000048 GO:0005515
Vvi19g140 309 MobiDBLite consensus disorder prediction 276 296 - -
Vvi19g140 309 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 304 - -
Vvi19g140 309 ProSiteProfiles IQ motif profile. 66 94 IPR000048 GO:0005515
Vvi19g140 309 MobiDBLite consensus disorder prediction 18 51 - -
Vvi19g140 309 MobiDBLite consensus disorder prediction 18 46 - -
Vvi19g140 309 MobiDBLite consensus disorder prediction 272 309 - -
Vvi19g140 309 PANTHER IQ-DOMAIN 5-RELATED 3 304 - -
Vvi19g140 309 Coils Coil 139 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g140 - - - vvi:100253850 611.298
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g183 Vvi19g140 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g474 ECH 107 328 IQD Protein Family AT3G09710 56.4 1.8e-59 227.3
Vvi8g606 ECH 1 289 IQD Protein Family AT5G03040 56.6 1.1e-72 271.2
Vvi13g474 ECH 1 299 IQD Protein Family AT5G03040 53.0 2.1e-68 256.9
Vvi13g474 ECH 1 309 IQD Protein Family AT3G52290 59.5 1.5e-79 293.9
Vvi8g606 ECH 6 289 IQD Protein Family AT3G52290 56.4 3.7e-75 279.3
Vvi13g474 ECH 96 310 IQD Protein Family AT2G26410 54.6 1.6e-48 191.0
Vvi6g808 . 1 418 IQD Protein Family AT3G22190 60.9 8.6e-109 391.0
Vvi4g85 . 1 390 IQD Protein Family AT2G26180 60.9 5.5e-116 414.8
Vvi19g140 ECH 1 243 IQD Protein Family AT3G15050 53.5 7.0e-61 231.1
Vvi10g183 ECH 67 264 IQD Protein Family AT3G15050 56.7 3.4e-55 212.2
Vvi15g624 ECH 1 558 IQD Protein Family AT4G00820 55.5 4.2e-129 458.8
Vvi15g624 ECH 1 558 IQD Protein Family AT1G01110 51.0 1.2e-120 430.6
Vvi9g268 ECH 1 373 IQD Protein Family AT3G16490 57.3 5.0e-79 292.0
Vvi11g260 ECH 1 395 IQD Protein Family AT3G16490 51.0 2.1e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37