Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g140 ATGGGTGCGGGAGGCTGGTTTAAGATGATAATTAGCCTAAGGAAAGTGAAGGAAGATAGATCTAAACCAGCAAAGGTGCACTCAACCACCGAAAAATCAAGCAACTCCAAGGGGAAGCACCATATTGATAAGGAGTCGAGCAGTCTTGCCAATGGCGCTTTGGGTAAAAGTGCCGGTGTTCATAAGATTCCAGTTGAGGAGAGAGCTGCAATTCAAATTCAAACAACATACCGGGCATATAAGGCAAGAAAAAACCTGCACCGTTTGAGAGGGACAGTGAGATTTCAGGTGATGACACAAGGCGATATTGTTAGGAAGCAGGCTTCAACCACATTGAGCTACATACATGCATGGAGCAGAATACAGGCTCAGATTAGTGCCAGGCGGCATTGTATGGCTCAAGAAGGTCGGGTTAGGCAGAAGAAACTTGAGAATCAGTTGAAACTTGAGGCAAAGCTGCATGAGCTAGAGGTGGAATGGTGTGGTGGCTCTGAAACCATGGAGGAAATCCTTTCGAGGATACAGCAGAGGGAAGAAGCAGCAGTTAAGCGTGAGAGAGCCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACAATAGTCAGTATCTGGGCCACACTTATTATGATCTCGGCAAAGAAAACTGGGGTTGGAGCTGGATGGAGCGCTGGATAGCTGCTCGACCATGGGAGACTCGGGTTCATGCTCAGTCAACTCTTCCAAAGAAAGCTCAAACCAAGCATGTGATCAAGGTAGGAAAAATTACAAACCCACAGACAATGAAAACTCCAGTTCTAGTCAGGCCTGCTTTGTCTAATGGGAAGGGAACTACAAAGCCAGCTGCCCAAGAAGCAGTGACCACTGCAGTCAGCTCTTCTCGGTCTGAAGCTGAAGAAGCAAACACCAAACATGAACAAATTATCACTTAG 930 46.99 MGAGGWFKMIISLRKVKEDRSKPAKVHSTTEKSSNSKGKHHIDKESSSLANGALGKSAGVHKIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSYIHAWSRIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEVEWCGGSETMEEILSRIQQREEAAVKRERAMAYAFSHQWRANNSQYLGHTYYDLGKENWGWSWMERWIAARPWETRVHAQSTLPKKAQTKHVIKVGKITNPQTMKTPVLVRPALSNGKGTTKPAAQEAVTTAVSSSRSEAEEANTKHEQIIT* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1809113 1811504 - Vvi19g140 Vvi19g140 781639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g140 309 SMART iq_5 65 87 IPR000048 GO:0005515
Vvi19g140 309 Pfam IQ calmodulin-binding motif 67 86 IPR000048 GO:0005515
Vvi19g140 309 MobiDBLite consensus disorder prediction 276 296 - -
Vvi19g140 309 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 304 - -
Vvi19g140 309 ProSiteProfiles IQ motif profile. 66 94 IPR000048 GO:0005515
Vvi19g140 309 MobiDBLite consensus disorder prediction 18 51 - -
Vvi19g140 309 MobiDBLite consensus disorder prediction 18 46 - -
Vvi19g140 309 MobiDBLite consensus disorder prediction 272 309 - -
Vvi19g140 309 PANTHER IQ-DOMAIN 5-RELATED 3 304 - -
Vvi19g140 309 Coils Coil 139 159 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g183 Vvi19g140 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g140 - - vvi:100253850 611.298