Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g143 ATGGAGTATTCTTCAGAGGAATGTGAGCAATTGTATGGGTTTTTGCCATGCAGCAACAATATTTTTGGGCATCTGTTCCTAATTGTTGTGTATGAATACTTGATGTTTCATGGAGAGTCATATGTGGCATCTGGGGGTGAGCAGATTTTCAAGATTTTGGGGCCTGGGGTGTTTGGTGCCAGTGTGTTTCAGGTCCTTGGTGCTCTCCCTGAGTCCTTGATTCTTCTTGCGTCTGGACTTCTGAACAGCAAAGACACTGCTCAAGAGTATGTGCTCACCGCCGTCGGCTTGTTGGCCGGATCGACGATCTTGCTCCTCACTGTACTTTGGGGCACTTGTGTCATTGTTGGGAGTTGTGAGTTTCCCGGCGCTGGTTCGGGCGCTACGGTTGATGCAAATTTATTACAAAAACCATATCGGAAAATATTATTGATGTTAACGGGTAGTGGGATTGCAACAGATGAAGAAACTGGGTACATGGCAAGGATCATGGGTCTATCAATAATACCATTCATCATCATCCAAATCACAATATTATTCCAATTGTCTTATGGGGAACGCGTTGTGATCTTGATCACTCTTATTGTTTCTCTTATTTTTCTTCTCCTCTACTTCATCTATCAGATATTTCAGCCTTGGATTCAGCAAAGAAGATTAGAGTACGTAAAACATGATCATTTAGTGATAAGAATTTTACGATACTTCCAAGAACATGCTGTAGGAAAACTCCTCACAGACGAAGGAGCTCCGAACATAAGTGTTATAAGAGGGCTGTTTGAGGAAACAGACCTTGATGGTGATGACTATATATCGCCTGCTGAAATCAAGGAGCTTCTTCTTGGGATCAGGTTTCGAAAACCACACTTGATCAATAAGGAAGATGCAGTGCTAGATGTTCTAGGACAGTTTGATATTGATGGTGACGGAACAATAACAAAGGATGAGTTCATAGCTGGGATCTCAAAATGGCTTGATGAGACAAAGAAAGGATTGCATGACAGAAGTTACTCCAATAATTCATTGAAAGATCTACAACAGGTTCTTCGGCCTTGGATTCTAAAGAGAAGGAACGAAAAAGAAATGAAGGAAAAATTGATGTCTGGGATTTTAAGACATGTTCAAAACAGTGGCCTAGGAAGCCTGCTTAAAGAGGATAACACGCCGGATATAGCAAATATAAAAAGCCTCTTTGAGAGAATTGATCTTGATGGAGACAATTGCATATCACAAGCTGAACTAAAAGAACTCATTATGAGCATCAAGTTTGGAGACATGCCGCTAGACGTAGACGAAGCGGTCGCAAGAATAATGGAAAAACTTGACGTCAATGGAGACCGATTAATCGATGAGGAGGAGTTCATCCAAGGCCTTGCCAAATGGGTTAACATTTCCAGCCATCAGGCCCTGCAGTCGCCCAAACCGAACGACGAAATATTCCTTAAAGCTTGGAAAGAGACAGACGAGTTGGTAGAACAGACCAGTGCAGGGCCAGTTGATAAATCTCCTTGGGCATGGTTCAAGGCCATAATGCTTTTGTTGGCTGGAATTCTTATTCTATCTGTTCTAGCAGAACCCCTCATACATAGTGTACAATCCTTCTCAACAGCTGCTAATATATCGTCGTTTTTCATCGCATTCATCCTCGTCCCGTTAGCTACCAACGCTAGGGCTGCAACTTCAGCGATCTCCGCCGCGAGTAGAAGAAAAGAAAGAACTACTTCCTTGACATTTTCTGAGATCTATGGAGGAGTCTTCATGAACAATGTCCTAGGGATTTCAGTACTATTGTCCATAATTTACGTACGCGAATTGACATGGGATTTCTCGGCTGAAGTACTCGTTGTTATGATCGTATGCGTGGTGATGGGCATGTTTGCAAGCTTGCGCTCCACCTTCCCAGTCTGGACATCGATCGTTGCATACTTACTGTATCCATTGTCTTTGCTTTTGGTTTATGCTCTTGATGGTTTTGCCAAATGGTTCTAA 1986 42.6 MEYSSEECEQLYGFLPCSNNIFGHLFLIVVYEYLMFHGESYVASGGEQIFKILGPGVFGASVFQVLGALPESLILLASGLLNSKDTAQEYVLTAVGLLAGSTILLLTVLWGTCVIVGSCEFPGAGSGATVDANLLQKPYRKILLMLTGSGIATDEETGYMARIMGLSIIPFIIIQITILFQLSYGERVVILITLIVSLIFLLLYFIYQIFQPWIQQRRLEYVKHDHLVIRILRYFQEHAVGKLLTDEGAPNISVIRGLFEETDLDGDDYISPAEIKELLLGIRFRKPHLINKEDAVLDVLGQFDIDGDGTITKDEFIAGISKWLDETKKGLHDRSYSNNSLKDLQQVLRPWILKRRNEKEMKEKLMSGILRHVQNSGLGSLLKEDNTPDIANIKSLFERIDLDGDNCISQAELKELIMSIKFGDMPLDVDEAVARIMEKLDVNGDRLIDEEEFIQGLAKWVNISSHQALQSPKPNDEIFLKAWKETDELVEQTSAGPVDKSPWAWFKAIMLLLAGILILSVLAEPLIHSVQSFSTAANISSFFIAFILVPLATNARAATSAISAASRRKERTTSLTFSEIYGGVFMNNVLGISVLLSIIYVRELTWDFSAEVLVVMIVCVVMGMFASLRSTFPVWTSIVAYLLYPLSLLLVYALDGFAKWF* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1859319 1866090 - Vvi19g143 Vvi19g143 781642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g143 661 ProSiteProfiles EF-hand calcium-binding domain profile. 291 326 IPR002048 GO:0005509
Vvi19g143 661 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 336 - -
Vvi19g143 661 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 506 655 - -
Vvi19g143 661 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 346 483 - -
Vvi19g143 661 SUPERFAMILY EF-hand 252 460 IPR011992 -
Vvi19g143 661 CDD EFh 255 321 IPR002048 GO:0005509
Vvi19g143 661 Pfam EF-hand domain pair 254 318 IPR002048 GO:0005509
Vvi19g143 661 Pfam EF-hand domain pair 392 455 IPR002048 GO:0005509
Vvi19g143 661 SMART efh_1 295 323 IPR002048 GO:0005509
Vvi19g143 661 SMART efh_1 392 420 IPR002048 GO:0005509
Vvi19g143 661 SMART efh_1 432 460 IPR002048 GO:0005509
Vvi19g143 661 SMART efh_1 254 282 IPR002048 GO:0005509
Vvi19g143 661 ProSitePatterns EF-hand calcium-binding domain. 263 275 IPR018247 -
Vvi19g143 661 Gene3D - 207 334 - -
Vvi19g143 661 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Vvi19g143 661 ProSitePatterns EF-hand calcium-binding domain. 304 316 IPR018247 -
Vvi19g143 661 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Vvi19g143 661 Gene3D - 340 469 - -
Vvi19g143 661 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Vvi19g143 661 CDD EFh 393 458 IPR002048 GO:0005509
Vvi19g143 661 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Vvi19g143 661 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Vvi19g143 661 Pfam Sodium/calcium exchanger protein 509 652 IPR004837 GO:0016021|GO:0055085
Vvi19g143 661 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 4 336 - -
Vvi19g143 661 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 506 655 - -
Vvi19g143 661 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 346 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g143 - - - vvi:100241883 1226.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g181 Vvi19g143 ECH
Vvi12g207 Vvi19g143 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g143 . . . . . . . . . . Cma01g01235 . . . . . Cpe02g00681 . . . . . . . Cla11g01724 Cam11g1793 Cec11g1814 Cco11g1820 Clacu11g1952 Cmu11g1762 Cre11g2171 Cone6ag0181 . . Cone15ag1027 Lsi04g02031 Csa04g02303 Chy07g00038 Cme07g00549 . . . . . . . . . Cmo01g01288 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030073 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2