Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g145 ATGAAAGCTCTCCAACGGCTTAAAGGAAAGCAGTCGCAAGTCTTTGTGGTTCATTCATCTTTATCAATGGCGGAGCGTGTGTTTTCAAAAGCTAATGAATTGGGCATGATGGAAAAGGGTTCTGTTTGGATCACTACAGACAGTATCACAAATCTTGTACATTCCATGAATTCCTCAATCATCTCTTCCATGGAAGGTGTTCTAGGAATGAAGAGCTTCTTCCAGGAAGACGGAGCCCGGTTCCAAGACTTCTACTCCAGATTTCGACAGAAGTTTCGATCACTGTATCCTAAGGAAGACAACCACGAGCCTGGGATTTTCGCCGTTCGGGCATATGATGCTGTGTGGTCTGTTGCTCTAGCAATGGACAACAACGGGTCGACCCAACAATTGTTAGAAAAGATTGAACTCAGCGATTTCCATGGCCTCACAAATAGAATCAAATTTGAGAGACGACGCTTGGCTCCACAGCGCATGTTTCAGATTGTTAATGTGATTGGAAAAAGTTATAGAGAGCTCGGATTCTGGTCGGAGGGATCAGGCTTCGCCAAGCCTACTAATGGTCAAATTCAAAACAGTAGCTCCATGGACATCCTGGGGCAAGTGTTTTGGCCAGGAGGCCTTATTTCCACCCCAAGAGGATGGGTACTTCCTACAAGCGAAACCCCATTGCGAATTGGAGTGCCCCTCAATGCCACATTCAAACAATTTGTTTCTGTAACATATGATGATGGAGGCAATCCATCGGTTTCCGGGTTCTCAATCGAAGTCTTCAAAGCAGTTCTGAAACATTTAAACTACATTCTACCTTATGAGTTTTTTCCCTTCAGTGGTATCTATGATGATTTGGTGGAACAGGTTCATCTCAAGGACATCCCGTCCTCCGCCACTGGAGCCGTTCTCCAACTCTCAGAAGCCCTGAAAAATGTAGGAATAGAAATAGGCCACCTTCTGCCTCTCCCACCTTTGTCTTCTTCTTCTTCATTGGTTGAAGAGCCCCAGAGTCTTAAAGAAGGGCAGTGTAGAGTGTTTGTGGTTCATACATCCTTGCAATTGGGGGTTCACCTATTCGAAACTGCCAAGAAGATGGAAATGATGAAAGAAGTGTATGTATGGATCATTACAGACACCATTTCCAGTCTTGTCCATTCCGTAAAAGCCTCTACCATCTCCTCATCCATGGATGGAATTGTAGGTGTCAAAAGCTACTTCAATGAAACCACACCCCAGTTCAAGATATTCCGGGGGAGATTCAGGAGGAAGTTCATCTCAGAACACCCTGACGAAGAAAAGAATGAACCCGGGATTTACGCAGCTAAGGCCTATGACGCCACTTGGGCTGCAGCTCTAGCAATGAAGGGAGGAAGGGACTTCTACTCCAGATTTCGACAGAAGTTTCGATCACTGTATCCTAAGGAAGACAACTACGAGCCTGGGATTTTCGCCGTTCGGGCATATGATGCTGTGTGGTCTGTTGCTCTAGCAATGGACAACAACGGGTCGACCCAACAATTGTTAGAAAAGATTGAACTCAGCGATTTCCATGGCCTCACAAATAGAATCAAATTTGAGAGACGACGCTTGGCTCCACAGCGCATGTTTCAGATTGTTAATGTGATTGGAAAAAGTTATAGAGAGCTCGGATTCTGGTCGGAGGGATCAGGCTTCGCCAAGCCTACTAATGGTCAAATTCAAAACAGTAGCTCCATGGACATCCTGGGGCAAGTGTTTTGGCCAGGAGGCCCTACTTCCACCCCAAGAGGATGGGCACTTCCTACAAGCGAAACCCCATTGCGAATTGGAGTGCCCCTCAATGCCACATTCAAACAATTTGTTTCTGTAACATATGATGATGGAGGCAATCCATCGGTTTCCGGGTTCTCAATCGAAGTCTTCAAAGCAGTTCTGAAACATTTAAACTACAGTCTACCTCATGAGTTTTTTCCCTTCAGTGGTACCTATGATGATTTGGTGGAACAGGTTCATCTCAAGAAATTTGATGCAGTGGTTGGCGATACGTCGATAGTTTCAAAGAGATGGGAGCTGGCTGAATTTTCGCATCCCTACACAGAACCAGGATTGATGATGATAGTTCCTGAGAAAGTAGAGACATCCAATAGGGCTTGGTTATTCATGAAGCCCTTCACCAAGGCGATGTGGGTTCTAACAGGTGCTATAACCATCTACAATGGCTTCACCCTCTGGTTGATAGAACGAAACCAAAACCCAGAACTTATGACAGGCTCTATTCTGAACCAAATGGGAACCTTGGTTTGCCTATCCTTCACCACCCTCTTCTCTATGCATGGAAGGCAACATAGTAATCTGTCCCGGTTGGTAATGGTGGTCTGGCTGTTCGCATCTCTGGTGATAACGAATAGCTACACTGCTAATCTTACAAGCATGCTTACGGTCCAACGCCTTGAACCTACTGTGGTCGATGTGGAAGATCTGAAGAGTGCTAATTCCATTGTTGGGTGCAGCGGACGATCATTCGTGGTGAGGTATTTGGTGGATGTCATAAGAATAAAAGAAAGTAACATAAAAGATATTACTTCAGCTGAAGAGTATGCTCCAGCTCTCAGAAGCGGAGAGATAGCAGCAGCCTTCATTGAAGCTCCCTACGCCAAACTATTCCTTGCCCAAAACTGCAAAGGCTTTGCAGCTTCTGGGAAAACATACAAAGTTGGTGGCTTTGGATTTGTGTTTCCAAAGGGATCATCTATTCTTCCAGACATATCTAAAGCAGTCTTGGAGGTGTCCGAAAAAGGTGAGTTAGGCGTCTTAGAGAACAATTTGATTGGATCCCAGAAGTGTGATTCAAATGCAGAAATCAGTGAGGATAGCAGTAGTCTTAGCCCTAGCAGCTTTTGGGTACTTTTCTTAATAACAGGAGGTGTATCAACAGTTTGTCTTGTAATCTTCATGGCCAGAGAAAGGTTAACCTATTTGTATAATTATTTGTTGGGGCATATGGCCATTTGGAGACTAATATCAGCTGTAATGAGAAGCTGGAGATCACATCCACGTGGTCGATTCTCTAGAGGAATTAGCGACGTAGAAAGTAATGGTAATGCCCAACACACATCTATCCATTCACCACAATACTTTGGATATAGAGTGCCATGGCAGAGAAATTACAGCTCCAGAAGTTCTTCCTAA 3162 44.69 MKALQRLKGKQSQVFVVHSSLSMAERVFSKANELGMMEKGSVWITTDSITNLVHSMNSSIISSMEGVLGMKSFFQEDGARFQDFYSRFRQKFRSLYPKEDNHEPGIFAVRAYDAVWSVALAMDNNGSTQQLLEKIELSDFHGLTNRIKFERRRLAPQRMFQIVNVIGKSYRELGFWSEGSGFAKPTNGQIQNSSSMDILGQVFWPGGLISTPRGWVLPTSETPLRIGVPLNATFKQFVSVTYDDGGNPSVSGFSIEVFKAVLKHLNYILPYEFFPFSGIYDDLVEQVHLKDIPSSATGAVLQLSEALKNVGIEIGHLLPLPPLSSSSSLVEEPQSLKEGQCRVFVVHTSLQLGVHLFETAKKMEMMKEVYVWIITDTISSLVHSVKASTISSSMDGIVGVKSYFNETTPQFKIFRGRFRRKFISEHPDEEKNEPGIYAAKAYDATWAAALAMKGGRDFYSRFRQKFRSLYPKEDNYEPGIFAVRAYDAVWSVALAMDNNGSTQQLLEKIELSDFHGLTNRIKFERRRLAPQRMFQIVNVIGKSYRELGFWSEGSGFAKPTNGQIQNSSSMDILGQVFWPGGPTSTPRGWALPTSETPLRIGVPLNATFKQFVSVTYDDGGNPSVSGFSIEVFKAVLKHLNYSLPHEFFPFSGTYDDLVEQVHLKKFDAVVGDTSIVSKRWELAEFSHPYTEPGLMMIVPEKVETSNRAWLFMKPFTKAMWVLTGAITIYNGFTLWLIERNQNPELMTGSILNQMGTLVCLSFTTLFSMHGRQHSNLSRLVMVVWLFASLVITNSYTANLTSMLTVQRLEPTVVDVEDLKSANSIVGCSGRSFVVRYLVDVIRIKESNIKDITSAEEYAPALRSGEIAAAFIEAPYAKLFLAQNCKGFAASGKTYKVGGFGFVFPKGSSILPDISKAVLEVSEKGELGVLENNLIGSQKCDSNAEISEDSSSLSPSSFWVLFLITGGVSTVCLVIFMARERLTYLYNYLLGHMAIWRLISAVMRSWRSHPRGRFSRGISDVESNGNAQHTSIHSPQYFGYRVPWQRNYSSRSSS* 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1908115 1925741 + Vvi19g145 Vvi19g145 781644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g145 1053 Gene3D - 1 103 - -
Vvi19g145 1053 Gene3D - 295 431 - -
Vvi19g145 1053 SUPERFAMILY Periplasmic binding protein-like II 199 285 - -
Vvi19g145 1053 Pfam Receptor family ligand binding region 2 166 IPR001828 -
Vvi19g145 1053 Pfam Receptor family ligand binding region 301 540 IPR001828 -
Vvi19g145 1053 SUPERFAMILY Periplasmic binding protein-like I 458 589 IPR028082 -
Vvi19g145 1053 Gene3D - 452 528 - -
Vvi19g145 1053 Gene3D - 592 707 - -
Vvi19g145 1053 SUPERFAMILY Periplasmic binding protein-like I 2 215 IPR028082 -
Vvi19g145 1053 Gene3D - 708 852 - -
Vvi19g145 1053 Gene3D - 223 294 - -
Vvi19g145 1053 Gene3D - 113 222 - -
Vvi19g145 1053 PANTHER GLUTAMATE RECEPTOR 456 1034 - -
Vvi19g145 1053 PANTHER GLUTAMATE RECEPTOR 2 290 - -
Vvi19g145 1053 PANTHER GLUTAMATE RECEPTOR 290 454 - -
Vvi19g145 1053 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 456 1034 - -
Vvi19g145 1053 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 290 454 - -
Vvi19g145 1053 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 290 - -
Vvi19g145 1053 SUPERFAMILY Periplasmic binding protein-like II 573 931 - -
Vvi19g145 1053 SUPERFAMILY Periplasmic binding protein-like I 302 453 IPR028082 -
Vvi19g145 1053 Pfam Ligand-gated ion channel 930 966 IPR001320 GO:0015276|GO:0016020
Vvi19g145 1053 CDD GluR_Plant 597 934 - -
Vvi19g145 1053 Pfam Bacterial extracellular solute-binding proteins, family 3 614 929 IPR001638 -
Vvi19g145 1053 SMART GluR_14 597 936 IPR001320 GO:0015276|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g145 - - - vvi:100257269 1227.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g178 Vvi19g145 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68