Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g146 ATGAAAGCCATTGCTGCAAGTCTTAAAGAAGGGCAGTGTAGAGTGTTTGTGGTTCATACATCCTTGCAATTGGGGGTTCACCTATTCGAAACTGCCAAGAAGATGGAGATGATGAAAGAGGGGTATATATGGATCATTACAGACACCATTTCCAGTCTTGTCCATTCCATAAAAGCCTCTACAATCTCCTCATCCATGGATGGAATTGTAGGTGTCAAAAGCTACTTCAATGAAAACACTCCCCAGTTCAAGATATTCCGGGGGAGATTCAGGAGGATGTTCATCTCAGTACACCCTGACGAAGAAAAGAATGAACCCGGGATTTACGCAGCTAAGGCCTATGATGCCACTTGGGCTGCAGCTCTAGCAATGACGGGAGGAAGGGGTACTGGCCAACAACTCCTAGAAAAAATTTCAAACGGCCAATTTGATGGCTTAACTGGAAAGATCCAATTCAGCGATCAGAAATTAGCCCCAGCACATATATTTCAGATTGTCAATGTTGTAGGGAAGAGTGATAGAGAACTAGGGTTCTGGTCCGAGACATCGGAGGAGGAGTCAGGTTTTTGGAGAGATAGAAGAGCTCTGGCACAGGTGGTTTGGCCTGGGGGACCCAGGAATACTCCAAGGGGATGGACTCCTCCAACAGATGAGAAGCCACTGAAGATTGGCGTGCCCAGTGGGTCCACTTTCAAACAGTTTGTAGAAGTGATACAAGATGGAAATAATATTTCTTTCAACGGATTCTCAATCAATGTCTTCAATGCAACTGTGGAACGCTTGCCATATGCTTTGCCACATAAGTTGTATGCCTTCAATGGCACATACGATGAACTAGTGAGACAGGTTTATTTAAAGCAGAAATTTGATGCAGTAGTTGGAGATGTTGCAATAGTAGCCAAAAGGTTTGAGCACGCAGAGTTCACACAACCTTATGCTGAACCAGGATTGCAGATGATAACCCCAGTTCGATCAAAAAGCAGCAATAAAGCATGGCTATTCATGAAGCCCTTCACAAGAGCCATGTGGATTCTAACAACATTCATAAATGTCTACAACGGATTCGTGGTATGGTTGATAGAAAGAAACCACTGCAATGAGCTTAAAGGCTCAGTCCTCAATCAAATAGGAACCCTACTGTGGCTAGCTTTCTCAACACTCTTTTCTCTGCATGGGGAAAAACTTCACAGCAATTTGTCGCGGATGGCGATGGTGGTGTGGCTGTTTGTGGCACTAGTCATCACACAGAGTTACACGGCGAACCTCACCAGCATGCTCACTGTCCAGCAGCTTGAACCGACGGTAGCCGATATCGAGACGCTGAAGAGTAGCAACTCGATGATCGGGTACTGTAGGGGGTCCTTTGTGTCAGCATACTTGAAGGATGTCTTAGGTTTCAATGAAAAAAACATCAAGAATTATTCATCACCTGAAGAGTATGCTAAAGCCCTCAAGGATGGACAGATAGCCGCAGCATTTCTTGAAGCTCCTTTTGCGAAATTATTCCTTGCGAAGTACTGCAAGAGCTTCATGGCAGCTGGGACGAGTTACAAAGTCGGAGGATTTGGATTCGTGAGTGCATTCTCTCTTTTCTTCTTCCATACCGGCATATTAAAAGTCATTGGATTCAGCTGCACAAAATTAATGGATACATTACCTTACCTCTCTTTGTTCATGGCCTTGATTTTGTTATTTTCACGAAAAGGAACAGCCGAGGATCCTGCTAAGGGAATTATAGGTGCCATTGTGGATCACACTTCTCGCATAGGTAAAGAAGAGAAGGTAGCAATGGAGATGGCTATTGATGATTTCAGACTCTACTCTAATGGAAGTCTTCGTCTGCACATTGAAAACTCTCAAAGGGAGCCCATCCAAGCTGCTCTTGCAGCTATGGATCTTATCAATAAGCATCAAGTTCAAACTATTATCGGGCCACGAACATGGGAAGAAGCATCCTTAGTTGCAGAGGTTGGCAGCCAAGCTCATGTCCCTATTCTTTCTTGCGCCAGTGCAACTCCACAGTGGGCATCTGAGAGGTGGCCCTTCCTCATTCAAGCCTCACCCAACCAACAAGCAGAAATCGAAGCAGTGACTGCAATTATTCGGTCTTGGGGATGGCATAGGGTCGCCATAATATATGAGGATATCGACTCAGTAGCATCTGAAGTTATCCCTCATTTCACCTATGCCCTGCAGGATATAGGCGCAGAAATCAGCCGTCTTGTAGCTCTCCCACCTTTTGCTTCTTCATTGTCCAAAGAACTCACGAGCCTAAAAAAGGAGCAGTGTCGAGTATTTGTTGTTCATTCCTCGTTGTCATTCGCAACACACATGTTTCAGCAGGCGAATCAAATGGGGATGATAGAGAAAGGTTATGTGTGGATCACTATGGACACCATTACAAGTCTCGCCCACTCTCTCAATGCATCAACCATCTCTACAATGCAAGGAGTGGTAGGGGTCAAGAGCTACTTCAACGAAACCGAGCCAAAATTTCAGGATTTCTATGTCAGATTCCGGAAAAAGTTCAGCTTGGAACATCCTGAAGAGGAAAACCATGAGCTTGGAATTTTTGCAGTGCAGGCCTATGATGCCATATGGACAGTGGCTCAAGCCTTGGTGGGCAACAACCTGGGGGGCCAACACATACTAGAACAAATTTCACTAACCTCCTTCCATGGATTAACAGGACTGGTTGAATTCACAGGCCGGAGAATAGCTCCATTGCGTAGATTTCAGATTGTCAACATGATTGGAAGGAGTTATAGAGAACTCGGGTTCTGGACATCGGAATCAGGCTTCACAGATACTATGGATGAGAAACTTGATTACAACCCTTCAATGAGAACACTAGGACAGGTGTTTTGGCCTGGGGGACCTTGGTCTATTCCCACTGGCTGGACTTTACCATCAAGCTATAAAACCCTAAAAATCGGTGTGCCCATTGGATCAGTGTTCAAATTTTTTGTGAATCCAATGTATGACTCTGAAAACAACCTCTCTTTCAGTGGACTCACCATCAAGATCTTCGAAGCCGTCCTGGAATACTTGCCATACTATTTGCCCCACCAATTCATTCCCTTCAATGGCTCATATGATGCATTAGTACTCCAGCTTGTCCACCCAGAGTTCGATGCAGTAGTTGGGGATGTAGCGATAACAGCGGAGAGGAATCGGCATGCAGAATTCACATATCCTTATACTGAATCCAGGTTGGTGATGATAGTCCCAGTGCAAACAAGGAATAGAGCATGGCTATTCATTAAGCCCTTCACAAAATCCATGTGGGCTCTAACAACAATCATCAATATCTACAATGGCTTTGTCATATGGTTGATAGAAAGAAACCACTGCTCCGATCTCAAAGGCTCAGTGTCGAATCAGATTGGAGTTTTGCTTTGGTTGGCCTTCACCACACTCTTCTCTTTACAGGGGCAAGAACTACACAGCAATTTGTCACGGATGGCAATGGTGATGTGGCTGTTTGTGGCGCTGGTCATCACGCAGAGTTACACGGCTAACCTTGCCAGCATGCTCACTGTGGAAACGCTTGAGCCGACGGTGGACGATATCGAGTCACTAAAGATTAGCAAAGCCGTGGTTGGGTGCAGTAGGGGAGCTTTTGTAGCAAACTATTTGGAGAAGGCCTTAGGGTTCCATACTGATAACATCAGAAGAATCACTGCACCAGAAGAGTATGCTCAGGCCCTTAGAAATGGGGAGATTGCAGCTGCATTTCTTGAAGCCCCTTTGGCCAAATTATTCCTAGCTCGATACTGCAAGGGCTTCGCTCGAGCAGGGCCGACGTTTAAAGTCGGAGGGTTTGGATTTGTATTTCCAAAGGGATCTCCGCTGCTTGTCGACATATCAGAAGCACTCTTGAAGGTGTCTGAAAGCGGAAAGCTACAAGAACTGGAGAATGCCATGGTTGCATCACAGAAGTGTGTGAATATGGATTGGGAAGAAGAAGATTCTAGCCTCAGCCCCAACAGCTTCTGGGTGCTTTTCATAATAACTGGAGGCACATCCACAGTGGCTCTTCTCACCTACATTGCTCACGATCATAGGACATTGATGAACCACTGGACGCATTGTAAGCGCAGAATCCCTCGAAAAGTCAGTGATTTGGAAAGCTCGACAAATTCACCAAACATGCCCGCGAATGCAACATTGTAA 4176 45.38 MKAIAASLKEGQCRVFVVHTSLQLGVHLFETAKKMEMMKEGYIWIITDTISSLVHSIKASTISSSMDGIVGVKSYFNENTPQFKIFRGRFRRMFISVHPDEEKNEPGIYAAKAYDATWAAALAMTGGRGTGQQLLEKISNGQFDGLTGKIQFSDQKLAPAHIFQIVNVVGKSDRELGFWSETSEEESGFWRDRRALAQVVWPGGPRNTPRGWTPPTDEKPLKIGVPSGSTFKQFVEVIQDGNNISFNGFSINVFNATVERLPYALPHKLYAFNGTYDELVRQVYLKQKFDAVVGDVAIVAKRFEHAEFTQPYAEPGLQMITPVRSKSSNKAWLFMKPFTRAMWILTTFINVYNGFVVWLIERNHCNELKGSVLNQIGTLLWLAFSTLFSLHGEKLHSNLSRMAMVVWLFVALVITQSYTANLTSMLTVQQLEPTVADIETLKSSNSMIGYCRGSFVSAYLKDVLGFNEKNIKNYSSPEEYAKALKDGQIAAAFLEAPFAKLFLAKYCKSFMAAGTSYKVGGFGFVSAFSLFFFHTGILKVIGFSCTKLMDTLPYLSLFMALILLFSRKGTAEDPAKGIIGAIVDHTSRIGKEEKVAMEMAIDDFRLYSNGSLRLHIENSQREPIQAALAAMDLINKHQVQTIIGPRTWEEASLVAEVGSQAHVPILSCASATPQWASERWPFLIQASPNQQAEIEAVTAIIRSWGWHRVAIIYEDIDSVASEVIPHFTYALQDIGAEISRLVALPPFASSLSKELTSLKKEQCRVFVVHSSLSFATHMFQQANQMGMIEKGYVWITMDTITSLAHSLNASTISTMQGVVGVKSYFNETEPKFQDFYVRFRKKFSLEHPEEENHELGIFAVQAYDAIWTVAQALVGNNLGGQHILEQISLTSFHGLTGLVEFTGRRIAPLRRFQIVNMIGRSYRELGFWTSESGFTDTMDEKLDYNPSMRTLGQVFWPGGPWSIPTGWTLPSSYKTLKIGVPIGSVFKFFVNPMYDSENNLSFSGLTIKIFEAVLEYLPYYLPHQFIPFNGSYDALVLQLVHPEFDAVVGDVAITAERNRHAEFTYPYTESRLVMIVPVQTRNRAWLFIKPFTKSMWALTTIINIYNGFVIWLIERNHCSDLKGSVSNQIGVLLWLAFTTLFSLQGQELHSNLSRMAMVMWLFVALVITQSYTANLASMLTVETLEPTVDDIESLKISKAVVGCSRGAFVANYLEKALGFHTDNIRRITAPEEYAQALRNGEIAAAFLEAPLAKLFLARYCKGFARAGPTFKVGGFGFVFPKGSPLLVDISEALLKVSESGKLQELENAMVASQKCVNMDWEEEDSSLSPNSFWVLFIITGGTSTVALLTYIAHDHRTLMNHWTHCKRRIPRKVSDLESSTNSPNMPANATL* 1392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1928970 1945302 + Vvi19g146 Vvi19g146 781645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g146 1391 Gene3D - 689 932 - -
Vvi19g146 1391 CDD GluR_Plant 974 1309 - -
Vvi19g146 1391 Gene3D - 1274 1307 - -
Vvi19g146 1391 SMART GluR_14 975 1312 IPR001320 GO:0015276|GO:0016020
Vvi19g146 1391 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 568 1383 - -
Vvi19g146 1391 Pfam Receptor family ligand binding region 8 169 IPR001828 -
Vvi19g146 1391 Pfam Receptor family ligand binding region 594 918 IPR001828 -
Vvi19g146 1391 SUPERFAMILY Periplasmic binding protein-like I 3 212 IPR028082 -
Vvi19g146 1391 PANTHER GLUTAMATE RECEPTOR 6 524 - -
Vvi19g146 1391 PANTHER GLUTAMATE RECEPTOR 568 1383 - -
Vvi19g146 1391 Pfam Bacterial extracellular solute-binding proteins, family 3 997 1306 IPR001638 -
Vvi19g146 1391 Gene3D - 1238 1273 - -
Vvi19g146 1391 Gene3D - 972 1083 - -
Vvi19g146 1391 Gene3D - 115 222 - -
Vvi19g146 1391 SUPERFAMILY Periplasmic binding protein-like II 195 525 - -
Vvi19g146 1391 CDD GluR_Plant 219 525 - -
Vvi19g146 1391 Gene3D - 331 471 - -
Vvi19g146 1391 Gene3D - 1084 1221 - -
Vvi19g146 1391 Gene3D - 584 907 - -
Vvi19g146 1391 Pfam Ligand-gated ion channel 341 493 IPR001320 GO:0015276|GO:0016020
Vvi19g146 1391 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 6 524 - -
Vvi19g146 1391 Gene3D - 1 95 - -
Vvi19g146 1391 CDD PBP1_GABAb_receptor_plant 579 938 IPR044440 -
Vvi19g146 1391 SUPERFAMILY Periplasmic binding protein-like I 579 967 IPR028082 -
Vvi19g146 1391 Pfam Bacterial extracellular solute-binding proteins, family 3 243 508 IPR001638 -
Vvi19g146 1391 SUPERFAMILY Periplasmic binding protein-like II 950 1307 - -
Vvi19g146 1391 Pfam Ligand-gated ion channel 1307 1341 IPR001320 GO:0015276|GO:0016020
Vvi19g146 1391 Gene3D - 223 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g146 - - - vvi:100255540 1657.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g178 Vvi19g146 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68