Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g147 ATGACTCAGAATTGGCCTTCTTTCCCCCACCAAAGAATGCCATCCATGGCAGCTCCTGCTCTCCTCCCCGCCGCCACCGCCACCACCACCTCCCAACATCCTTCTTGGGTGGACGAGTTTCTCGACTTCTCCTCCTCCAGGCGGGGCTCCCACCGCAGGTCTGTCAGCGACTCCATCGCCTTCCTTGAAGCTCCGGTGCTGGTTGAGGAAGCTAGGCATTCTCATGCCACAATGCTGCATGGCGCCAACGGCTTTGACCGGTTGGATGATGATCAGCTCATGTCTATGTTCTCCGACGACATATCCCTCACCGTGCCGCCCACTGTGTCGTCTTCCGGCCCGTCCACACCATCCGATCAGAACAGTAATAATGATGAGAAAGGCGATGAGAAAGGAGCAGCCCTTGACCAGCAGCCACCAAAGAATGAGCCTGGAGAGGTGGAGAGCTCATGCAAAACTGAATTACCATCTTTCAGGCCTTCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAGAATTTTGGCAAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGGAAGCTACAATACATTTCAGAGCTTGAGCGGAGCGTAACATCTTTACAAACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACGCTCATCAAGAGGCATTGAAGAAAGAGATAGAGAGACTGAGGCAAGTGTATCACCAACAAAGCCTAAAAAAGATGGGGAATTCAGCCACCGGAGCTCCACCGCAGTCAACGACACGACCACACCAAACCACCACCACTGATGCAGCCATGGGGTGTACTGACAAGGTGCAGCTTCTAAACTGA 930 52.37 MTQNWPSFPHQRMPSMAAPALLPAATATTTSQHPSWVDEFLDFSSSRRGSHRRSVSDSIAFLEAPVLVEEARHSHATMLHGANGFDRLDDDQLMSMFSDDISLTVPPTVSSSGPSTPSDQNSNNDEKGDEKGAALDQQPPKNEPGEVESSCKTELPSFRPSTASNGDSIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQSLKKMGNSATGAPPQSTTRPHQTTTTDAAMGCTDKVQLLN* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1945317 1947525 - Vvi19g147 Vvi19g147 781646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g147 309 PANTHER BASIC LEUCINE ZIPPER 34 1 293 - -
Vvi19g147 309 PANTHER BASIC LEUCINE ZIPPER 2 1 293 - -
Vvi19g147 309 Pfam bZIP transcription factor 173 217 IPR004827 GO:0003700|GO:0006355
Vvi19g147 309 MobiDBLite consensus disorder prediction 102 122 - -
Vvi19g147 309 MobiDBLite consensus disorder prediction 270 301 - -
Vvi19g147 309 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 171 223 IPR004827 GO:0003700|GO:0006355
Vvi19g147 309 CDD bZIP_plant_RF2 174 224 IPR044759 GO:0003700|GO:0006355
Vvi19g147 309 Coils Coil 252 272 - -
Vvi19g147 309 SUPERFAMILY Leucine zipper domain 173 227 IPR046347 GO:0003700|GO:0006355
Vvi19g147 309 MobiDBLite consensus disorder prediction 270 300 - -
Vvi19g147 309 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 176 191 IPR004827 GO:0003700|GO:0006355
Vvi19g147 309 MobiDBLite consensus disorder prediction 102 170 - -
Vvi19g147 309 MobiDBLite consensus disorder prediction 154 168 - -
Vvi19g147 309 Gene3D - 172 245 - -
Vvi19g147 309 SMART brlzneu 169 233 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g210 Vvi19g147 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14406 PF00170 bZIP_1 1.30E-09 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g147 - - vvi:100258873 561.222