Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g151 ATGGCTGCCTACAGAGCAGACGACGACTACGATTACCTCTTCAAATTCAGTCTCGAATCCAAATCCACTATCGGTGTTGAATTCGCCACCCGGAGTATTCGGGTGGATGACAAGATCGTCAAGGCTCAGATTTGGGACACTGCTGGCCAGGAGAGATACCGTGCAATCACCAGTGCATACTACCGAGGTGCTGTTGGTGCACTCCTTGTCTATGATGTCACCCGACATGTTACATTTGAGAATGTGGAGAGATGGTTAAAGGAGCTCCGGGATCATACTGACTCGCATATTGTGATAATGCTTGTTGGCAACAAGGGAGACTTGCGTCACTTGCGTGCAGTTTCCATTGATGATGCCAAGGCATTTGCTGAGAGAGAAAACACTTTCTTTATGGAGACATCTGCCCTTGAGTCCATGAATGTTGAGAATGCATTCACTGAAGTGCTCACTCAAATATATCAAGTGGTTAGCCGGAAAGCCCTTGATATTGGGGATGACCCTGCTGCTTTGCCTAAAGGGCAAACCATTAATATGAGATTGATGAATTATTTCCTCCATAATGTCTTAGTAAAGAGGCTCCTCAATAAAGCATCTGGAATTTCATGCAGTCCCTGA 615 45.69 MAAYRADDDYDYLFKFSLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSHIVIMLVGNKGDLRHLRAVSIDDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYQVVSRKALDIGDDPAALPKGQTINMRLMNYFLHNVLVKRLLNKASGISCSP* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2014868 2018538 + Vvi19g151 Vvi19g151 781650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g151 204 SMART ran_sub_2 2 200 - -
Vvi19g151 204 Pfam Ras family 15 153 IPR001806 GO:0003924|GO:0005525
Vvi19g151 204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 158 IPR027417 -
Vvi19g151 204 PANTHER DRAB11-RELATED 16 178 - -
Vvi19g151 204 SMART ras_sub_4 21 155 - -
Vvi19g151 204 PRINTS Transforming protein P21 ras signature 15 31 - -
Vvi19g151 204 PRINTS Transforming protein P21 ras signature 33 55 - -
Vvi19g151 204 PRINTS Transforming protein P21 ras signature 95 108 - -
Vvi19g151 204 PRINTS Transforming protein P21 ras signature 130 152 - -
Vvi19g151 204 TIGRFAM small_GTP: small GTP-binding protein domain 16 148 IPR005225 GO:0005525
Vvi19g151 204 ProSiteProfiles small GTPase Ras family profile. 1 189 IPR001806 GO:0003924|GO:0005525
Vvi19g151 204 SMART rho_sub_3 24 151 IPR001806 GO:0003924|GO:0005525
Vvi19g151 204 Gene3D - 12 170 IPR027417 -
Vvi19g151 204 SMART rab_sub_5 14 155 - -
Vvi19g151 204 CDD Rab11_like 11 153 - -
Vvi19g151 204 ProSiteProfiles small GTPase Rab1 family profile. 1 202 - -
Vvi19g151 204 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 16 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g151 K07904 RAB11A; Ras-related protein Rab-11A - vvi:104877501 335.495
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g216 Vvi19g151 ECH
Vvi10g164 Vvi19g151 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g151 . . . . . . . . . . Cma01g01232 Cma09g00833 Car01g01053 Car09g00748 . Cpe06g00664 Cpe02g00684 Bhi09g03479 . . . Hepe01g1418 Mch11g1033 . Cla11g01728 Cam11g1798 Cec11g1819 Cco11g1825 Clacu11g1957 Cmu11g1767 Cre11g2175 . Cone10ag1362 . . Lsi04g02036 Csa04g02308 Chy07g00044 Cme07g00557 . . . . . . . . . Cmo01g01285 Cmo09g00827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209