Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g152 ATGGGCTACCTTCAAATGAGTCGATTTTTCTTGTCTTTCATGGCCTGGGTGCTGTTGCTCTCACCAGCAGCAGCAGCAGCTGATCATGGAGGCACCAGCCACAGCGATGGCAGTATAGGAGTCATCGTTGATTATGGTTCCCGTGTCGGCAAAGAAGAGAAAGTAGCAATGGAGTTGGCCATTGATGATTTCTACAAGAAGACAAATCAACGATTGGTTTTGCATTCGAGAGACTCTCAAGGCGATCCTCTTCGTGCGAGGCTTTCAGCCATGGACCTCATTGAGAAGCAGCAAGTGCAGGCCATTGTAGGCCTTCATACTTGGGAGGAGGTGTCTTTAGTCGCAGAAGTTGGTGGCCAAGCTCGTATTCCTATTCTTTCACTGGCTGATTCAACTCCCAAATGGGCAACAGATCGGTGGCCATTCCTGGTTCAAGCCTCACCAAGTAGATACTTGCAAATGAACGCAGTGGCTGCCATTGTTGGGTCCTGGCAATGGCGTTGGATCACTGTAATATATGAGGACACTGACTCTGCAGCCACTGATATCATTCCATGTCTTGTCGATGCCCTCAAGCAAGTGGGTTCAGAAATTGGCTACCTTCTGGCTCTTCCACCATTTACTGTCAATTCCTCTTCTCCTTTATCAGGTGAGCTTGAGGGACTTAAAGGAAGGCAATCAAGAGTCTTTGTGCTTCATTCCTCTTTATCAATGGCAGCACATCTATTTGAAACAGCTAATGAATTGGGCATGATGGAAGAGGGATATGTTTGGATCATTACAGACAGAACTACAAATCTTATACATTCCATGAATTCTGCAACCATCTCATCAATGCAAGGCATTCTAGGAGTGAGGAGCTACTTCTCTCAAAGTGGACCACGGTTCCAAGGTTTCTATCTCAGATTCAGAGAGAAGTTTCATTCCTTGTATCCCAAGGAAGACAACCATGAGCCTGGTATTTTCGCTCTGCAGGCATATGATGCTGTATGGTCTGTGGCTCTTGCAATGGAGACAGCTCCAAGCAGCAAAAAAGGGTTAATCCAACCATTTTTAGAAAGAATAGCAATCAGTGATTTCCATGGCCTAAATAGTAGAATCCAATTCAACAGGAGAAGCTTGGCTCCACAGCGCATCTTTCAGATTATTAATGTGATTGGAAAGAGTTACAGAGAACTCGGGTTCTGGTTCGAGGGATCAGGTTTCTCCAAGACTACCAATGAGAAATCTACATACAGTAGGCAGCTTCAAGTCCTTGGACAAGTGCTGTGGCCAGGAGGCCCTTGGTCTGTTCCAAGAGGATGGTCTCTTCCAACAAGCCAAAAACCATTGCGGATCGGTGTCCCCCAACATGGAACATTCAAACAGTTCGTTAATGTGACATATGATGGAAGCCATTATTCTGTTACCGGATTCTCCATCGAGGTTTTCAATGCAACTCTAGAACACCTGAAATACCATTTAACATATGAGCTCATTCCTTACAGTGGCAACTTTGATTCATTGGTGGAGCAGGTTCATCTCAAATTTACATCTTTGGTCACCACAGGGGAGAAGTTGCATAGCAATTTATCAAGGTTGTCCATGGTGGTTTGGCTGTTTGTGGCACTGGTCATAACACAAAGCTACACAGCCAATCTCAGCACCCTGCTCACTGTCCAGCAGCTCAAACCCAGTGTCAAGTCCCTCAAGGATAACAATTTTGTGGTTGGTTGCAGCTTCCGGTCCTTTATCCCAAAATATCTGGAGGAAGTCCTGGGAATAGACCCGAAAAACATGAAAGATATTAGGTCATTCGAAGAATATCCTCAAGCTTTTAGAAGGGGAGAGATAGCAGCTACCTTCATGGAATCCTTGTACGCAGAAGTGTTTCTTGCCCAGTACTGCAAGGGCTTTGTTACTGTTGGGCCAACATTCAGAGTTGGAGGCTTAGGCTTTGTGTTTCCAAAGGGTTCAACTATACTTCCAGACATCTCAGAAGCGGTGGTGAAATTGTATGAAAAGGGCGAGATAATGTACTTACGTAACAAGTTGGTCCACTCCCAGAAATGCTTGGAAGTGGAAGCTGAAGATGATCACAGCATTAGCCCAGACAGCCTTTGGGTGCTCTTCTTAGCAACAGGAGCTACATCAACAGTTTCGCTGGCAATCTATGTGGCAGGTCAGATGCAGCATTTCCAGGATTTTATGTTGGAAAACATAGGTATTTGGAGGCTGATATCTGCAGCAATGAGATCCTGGATGCATCACCATGCACAACGAACACAATTCTCTGGTGGAGACCTCAAAAGAACCAGTTCTCTAGTAGAGTTAGGGACATACAGAGGAAGCCATGGAAATGTCTGA 2346 45.31 MGYLQMSRFFLSFMAWVLLLSPAAAAADHGGTSHSDGSIGVIVDYGSRVGKEEKVAMELAIDDFYKKTNQRLVLHSRDSQGDPLRARLSAMDLIEKQQVQAIVGLHTWEEVSLVAEVGGQARIPILSLADSTPKWATDRWPFLVQASPSRYLQMNAVAAIVGSWQWRWITVIYEDTDSAATDIIPCLVDALKQVGSEIGYLLALPPFTVNSSSPLSGELEGLKGRQSRVFVLHSSLSMAAHLFETANELGMMEEGYVWIITDRTTNLIHSMNSATISSMQGILGVRSYFSQSGPRFQGFYLRFREKFHSLYPKEDNHEPGIFALQAYDAVWSVALAMETAPSSKKGLIQPFLERIAISDFHGLNSRIQFNRRSLAPQRIFQIINVIGKSYRELGFWFEGSGFSKTTNEKSTYSRQLQVLGQVLWPGGPWSVPRGWSLPTSQKPLRIGVPQHGTFKQFVNVTYDGSHYSVTGFSIEVFNATLEHLKYHLTYELIPYSGNFDSLVEQVHLKFTSLVTTGEKLHSNLSRLSMVVWLFVALVITQSYTANLSTLLTVQQLKPSVKSLKDNNFVVGCSFRSFIPKYLEEVLGIDPKNMKDIRSFEEYPQAFRRGEIAATFMESLYAEVFLAQYCKGFVTVGPTFRVGGLGFVFPKGSTILPDISEAVVKLYEKGEIMYLRNKLVHSQKCLEVEAEDDHSISPDSLWVLFLATGATSTVSLAIYVAGQMQHFQDFMLENIGIWRLISAAMRSWMHHHAQRTQFSGGDLKRTSSLVELGTYRGSHGNV* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2019133 2022522 - Vvi19g152 Vvi19g152 781651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g152 781 Gene3D - 149 398 - -
Vvi19g152 781 PANTHER GLUTAMATE RECEPTOR 22 509 - -
Vvi19g152 781 PANTHER GLUTAMATE RECEPTOR 510 771 - -
Vvi19g152 781 Pfam Ligand-gated ion channel 677 709 IPR001320 GO:0015276|GO:0016020
Vvi19g152 781 Gene3D - 610 644 - -
Vvi19g152 781 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 509 - -
Vvi19g152 781 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 510 771 - -
Vvi19g152 781 PIRSF IGluLR_plant 508 773 IPR017103 -
Vvi19g152 781 PIRSF IGluLR_plant 4 514 IPR017103 -
Vvi19g152 781 Gene3D - 645 677 - -
Vvi19g152 781 SMART GluR_14 445 681 IPR001320 GO:0015276|GO:0016020
Vvi19g152 781 Pfam Bacterial extracellular solute-binding proteins, family 3 462 676 IPR001638 -
Vvi19g152 781 SUPERFAMILY Periplasmic binding protein-like I 39 435 IPR028082 -
Vvi19g152 781 CDD GluR_Plant 442 677 - -
Vvi19g152 781 Gene3D - 46 377 - -
Vvi19g152 781 Gene3D - 469 583 - -
Vvi19g152 781 Pfam Receptor family ligand binding region 54 386 IPR001828 -
Vvi19g152 781 CDD PBP1_GABAb_receptor_plant 38 404 IPR044440 -
Vvi19g152 781 SUPERFAMILY Periplasmic binding protein-like II 416 677 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g152 - - - vvi:100243505 1019.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68