Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g153 ATGGTTGTTTACCCTCTATTCTCGATTATGTGGTTAGCGGCAAGAGGACCTGATTTCGATACCCCTACTGTTGTTGCTGAGGATGGGTATAAATGCAATTCGTGGAGGTTATACAAGCAATGGAGCCAAGCAGTCTGTACTTCAAGTTGTGCTTGCGCATCGTCCACCGGGTTGTCCAAAATAAGCAAACTGGCTGCACGTGCTGATCTACACCATTTAGGACTGTTCTTACAGGGGAGGCAAGCTGATGCTCCCCAAGAAGCTCTTCAGGTTCTTGACATTCCATTGGGTGAGGGTTTGGAAAGTTGGCGTGGTTTCTATCAGAGTATTCGGCCAACTCAGATGGGACTGTCACTGAATATTGATATGTCCTCGACGGCTTTTATTGAGCCATTGCCTGTCATTGATTTTGTGACACAGCTTCTGAATCGGGATGTTTCTTCCCGACCATTATCTGATGCTGATCGTGTAAAGGTTAAGAAGGCTCTCAGAGGAGTCAAAGTTGAAGTTACTCATCGGGGAAATATGCGTAGAAAATATCGTATATCTGGCTTAACATCACAAGCAACACGTGAATTGACTTTTCCTGTTGATGATAGAGGAACCGTGAAATCTGTCTTTGAGTACTTCTATGAAACATATGGGTTTGTCATTCAGCATTCTCAATGGCCTTGTCTGCAAGTGGGAAATCAACAGAGGCCAAATTATTTGCCTATGGAGACGATTCACCATAATGCTTATCATGAGGATCCTTATGCTAAGGAGTTTGGTATCAAAATCAGTGAGAAGCTCGCTTCATGGAATATGATGAATAAGAAAATGTTTGCACAAATGTGTTATATTTCTGGCATGGCATTTAATCCGGAACCAGTACTTCCACCAATTACTGCACGTCCTGATCAGGTGGAGAGAGTTTTGAAGGCAAGGTTTCATGAAGCCATGACCAAACTCCAGCCACAGGGCAAGGAGCTTGATTTGCTTATTGTTATTTTGCCAGATAATAATGGTTCACTCTATGGTGATTTGAAACGAATCTGTGAGACAGATCTTGGGCTTGTTTCACAGTGTTGCTTACATAAACATGTGTATAGAATGAGTAAGCAATATCTGGCAAATGTGGCATTGAGGATTAATGTAAAGGTTGGAGGGAGAAATACGGTGCTTGTTGATGCAATATCAAGGCGCATACCTCTGGTCAGTGATCGGCCCACTATCATTTTTGGGGCTGATGTTACCCATCCTCACCCAGGAGAGGATTCAAGCCCATCTATTGTTGCTAACTGCTTATATCTTTCCGTAGAGCAACTGGGCAGAAACCTCAGCGCATAA 1329 43.27 MVVYPLFSIMWLAARGPDFDTPTVVAEDGYKCNSWRLYKQWSQAVCTSSCACASSTGLSKISKLAARADLHHLGLFLQGRQADAPQEALQVLDIPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKVKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDDRGTVKSVFEYFYETYGFVIQHSQWPCLQVGNQQRPNYLPMETIHHNAYHEDPYAKEFGIKISEKLASWNMMNKKMFAQMCYISGMAFNPEPVLPPITARPDQVERVLKARFHEAMTKLQPQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLHKHVYRMSKQYLANVALRINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIVANCLYLSVEQLGRNLSA* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2024588 2027866 + Vvi19g153 Vvi19g153 781652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g153 442 Gene3D paz domain 125 245 - -
Vvi19g153 442 PANTHER PROTEIN ARGONAUTE 1A 61 95 - -
Vvi19g153 442 SUPERFAMILY PAZ domain 126 241 IPR036085 GO:0005515
Vvi19g153 442 CDD PAZ_argonaute_like 131 240 - -
Vvi19g153 442 Gene3D - 254 387 - -
Vvi19g153 442 ProSiteProfiles PAZ domain profile. 132 246 IPR003100 GO:0005515
Vvi19g153 442 ProSiteProfiles Piwi domain profile. 326 426 IPR003165 GO:0003676
Vvi19g153 442 Pfam Argonaute linker 1 domain 95 130 IPR014811 -
Vvi19g153 442 PANTHER PROTEIN ARGONAUTE 1A 275 426 - -
Vvi19g153 442 SMART PAZ_2_a_3 136 252 IPR003100 GO:0005515
Vvi19g153 442 Gene3D - 395 437 IPR036397 GO:0003676
Vvi19g153 442 PANTHER PROTEIN ARGONAUTE 1A 95 241 - -
Vvi19g153 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 61 95 - -
Vvi19g153 442 SMART DUF1785_2 64 131 IPR014811 -
Vvi19g153 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 275 426 - -
Vvi19g153 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 95 241 - -
Vvi19g153 442 Pfam PAZ domain 136 243 IPR003100 GO:0005515
Vvi19g153 442 PANTHER PROTEIN ARGONAUTE 1A 241 266 - -
Vvi19g153 442 SUPERFAMILY Ribonuclease H-like 321 427 IPR012337 -
Vvi19g153 442 Pfam Piwi domain 327 427 IPR003165 GO:0003676
Vvi19g153 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 241 266 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g153 K11593 - vvi:100253740 681.019