Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g155 ATGGTCCACGAAACCTTTTATCTTTCTCCTCCGAGCAAATCCAGTGTGCAAAAGATGGGAACTCAACAGAGAAACCCTAAACCTAATAGCCATTATCAGCTTAATCCCAACTGGACTCAGCTCCAACAAAAGCTGAAAATCCATGCCTCAAGGCCTTCACAAAAATCCTCAAACGGTGCAGAGCCCCAAACCTCGAAAACCATTTTAGGTAAGCGCAAAGAGAGACCCGATGCAGAGCCTGATGCTTCTCAGCGCAATATTCTTATTCCAACCAATACTGATTCGAGTCTGACGGATGCAGTAGCTATGGATTGTGAAATGGTTGGTGTTGGTTCTGAAGGAAATAAAAGTGCTCTTGGACGAGTGACATTGGTTAATAAGTGGGGAAATGTTATATATGATGAGTATGTTCGCCCAGTTGAATGGGTTGTTGATTTCCGTACAGAAATTAGTGGAATCCGACCCCGTGACTTGAAAAAAGCTAAGGATTTCCAGACTGTTCAGAGGCAAGTGGCAGAGTTGATTAAAGGAAGACTTCTTGTTGGTCATGCGTTACGTAATGATCTTAAGGCTCTGCTATTAAGTCATCCAAAGGTGGACATGCGAGATACATCTGAGTGTGAACTCTTTTTAAAGGAAGAACGCAGGAGGGTGGCCCTTCGACATCTTGCAGCTGAGTTTCTTGGTGTTAAGATCCAGAATGGAGAGCACTGCCCTGTAGAAGATGCCCGCGCTGCAATGCTGCTTTATCAGAGAAACAGAAAACAATGGGAGAAGAATATCAAAGATCAGATTAGGCTGAGGCAAAAGCAGAAGAAACGGAAGCAGAAAAAGAAACCAAAGAGGAGAGATGCTTCAGATGTTAACCATGCTGCAACAGCTTCTTAA 888 43.69 MVHETFYLSPPSKSSVQKMGTQQRNPKPNSHYQLNPNWTQLQQKLKIHASRPSQKSSNGAEPQTSKTILGKRKERPDAEPDASQRNILIPTNTDSSLTDAVAMDCEMVGVGSEGNKSALGRVTLVNKWGNVIYDEYVRPVEWVVDFRTEISGIRPRDLKKAKDFQTVQRQVAELIKGRLLVGHALRNDLKALLLSHPKVDMRDTSECELFLKEERRRVALRHLAAEFLGVKIQNGEHCPVEDARAAMLLYQRNRKQWEKNIKDQIRLRQKQKKRKQKKKPKRRDASDVNHAATAS* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2050403 2057179 + Vvi19g155 Vvi19g155 781654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g155 295 PANTHER RNA EXONUCLEASE 4 14 278 - -
Vvi19g155 295 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 14 278 - -
Vvi19g155 295 Coils Coil 240 274 - -
Vvi19g155 295 SUPERFAMILY Ribonuclease H-like 100 259 IPR012337 -
Vvi19g155 295 MobiDBLite consensus disorder prediction 1 92 - -
Vvi19g155 295 SMART exoiiiendus 99 259 IPR013520 -
Vvi19g155 295 Pfam Exonuclease 101 250 IPR013520 -
Vvi19g155 295 MobiDBLite consensus disorder prediction 67 81 - -
Vvi19g155 295 MobiDBLite consensus disorder prediction 261 295 - -
Vvi19g155 295 Gene3D - 96 278 IPR036397 GO:0003676
Vvi19g155 295 MobiDBLite consensus disorder prediction 266 281 - -
Vvi19g155 295 MobiDBLite consensus disorder prediction 8 65 - -
Vvi19g155 295 CDD REX4_like 101 251 IPR037431 GO:0006364|GO:0008408
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g155 K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-] - vvi:100241776 524.628
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g155 . . . . . . . . . . . Cma09g00835 . Car09g00750 . Cpe06g00666 . Bhi09g03475 . . . . Mch11g1035 . Cla11g01730 . . . . . . Cone6ag0176 Cone9ag0201 . . Lsi04g02039 . . Cme07g00559 . . . . Bpe11g00451 . . . . . Cmo09g00830 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013924 1 3 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 1 24