Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g157 ATGGGAAGACCGCCCAGTAATGGAGGCCCCGCCTTTCGCTTCACACCCAATGAGGTTGCGGAGATGGAAAATATTTTGCAAGAGCACAATAATTCCATGCCGGCACGTGAAATTCTTGTAGCTCTTTCAGAGAAATTCAGTGCTTCAACGGATCGAGCAGGGAGAATTGTTGTTCAAGTGAAGCAAGTGTGGAATTGGTTCCAAAATAGACGCTATGCTATTAGGGCAAAATCTACTAAAGCTCCTGGGAAGTTAAGTGTGTCGTCTCTGCCTAAGGATGACTTGACTCAAGTGAAAAATGTGCCTCAAGATGAGGCTTATTTTAAATGTCCACTTGTTCTTGCCATCATCCTTCAAATTTGTACTGATTTGATTTTAGTGCCAGTTCCAAATGCAGGAAAGAGTGCTCCTTCAGATTCTTCCCAGATGGAGTTCGAAGCTAAATCTGCAAGGGATGGTGCATGGTATGACGTTGCAGCCTTTCTATCTCATAGATATCTTGATACCAGTGATCCGGATGTCCTGGTTCGGTTTGCTGGTTTTGGACCAGAAGAAGATGAATGGGTTAATGTTAAGCGGAACGTTAGACAACGCTCTCTCCCATGTGAATCATCAGAATGTGTCGTAGTTATCCCTGGAGATCTCATACTCTGTTTTCAGGAAGGTAAAGAACAGGCTCTTTACTATGATGCCCATGTCCTTGATGCCCAAAGGAGGAGGCATGATGTGAGAGGTTGTCGTTGTAGGTTTCTGGTGCGCTATGATCATGATCAATCTGAGGAAATTGTGCCACTGAGGAAAGTTTGTCGCCGGCCTGAGACTGATTACAGGTTGCAGCAACTTCATGCTTCAAATGAGTCTGGGTCTGTAGACCAGCAGAAACCTGAACCTTCTTATGGAGGCAGCATATCGAGGATCTTTCCTACGCCACCTGAAATGATGCAGAAGCTCCATGTGGCAGTGGACATTGCGGGTGCTGGTTCAGTTGTGAAGCCTCCTTCTGCTGATACTCCTATGCCTGCTGGAACTACAGCTCCAGAACCAAAACCTCTGGAAATCAGCAGCACTGGTAATGGGGGAAACCCTGGCATTCTCTCAGAAAATGCTGTAGTGACAGGCATCAGTTCTGCAAATGCCATTGCTGGAAACCCCGATTCCAAGTCTTCACTTCCTTTTAGCAACTTTCTTGGCAACCAAACAGAGCATCATGCTCCCCCTGATGGCAGCAGTGAAGAAACAGCAGTAGCAAAATTACATTGA 1260 45.95 MGRPPSNGGPAFRFTPNEVAEMENILQEHNNSMPAREILVALSEKFSASTDRAGRIVVQVKQVWNWFQNRRYAIRAKSTKAPGKLSVSSLPKDDLTQVKNVPQDEAYFKCPLVLAIILQICTDLILVPVPNAGKSAPSDSSQMEFEAKSARDGAWYDVAAFLSHRYLDTSDPDVLVRFAGFGPEEDEWVNVKRNVRQRSLPCESSECVVVIPGDLILCFQEGKEQALYYDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHASNESGSVDQQKPEPSYGGSISRIFPTPPEMMQKLHVAVDIAGAGSVVKPPSADTPMPAGTTAPEPKPLEISSTGNGGNPGILSENAVVTGISSANAIAGNPDSKSSLPFSNFLGNQTEHHAPPDGSSEETAVAKLH* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2065686 2074580 + Vvi19g157 Vvi19g157 781656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g157 419 MobiDBLite consensus disorder prediction 381 404 - -
Vvi19g157 419 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 293 - -
Vvi19g157 419 CDD homeodomain 13 75 IPR001356 GO:0003677
Vvi19g157 419 Gene3D - 140 201 - -
Vvi19g157 419 MobiDBLite consensus disorder prediction 281 307 - -
Vvi19g157 419 MobiDBLite consensus disorder prediction 330 364 - -
Vvi19g157 419 Pfam SAWADEE domain 142 269 IPR032001 GO:0003682
Vvi19g157 419 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 293 IPR039276 -
Vvi19g157 419 MobiDBLite consensus disorder prediction 281 299 - -
Vvi19g157 419 MobiDBLite consensus disorder prediction 381 419 - -
Vvi19g157 419 Gene3D - 2 84 - -
Vvi19g157 419 MobiDBLite consensus disorder prediction 349 364 - -
Vvi19g157 419 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Vvi19g157 419 SMART HOX_1 7 81 IPR001356 GO:0003677
Vvi19g157 419 Gene3D - 202 274 - -
Vvi19g157 419 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g157 - - - vvi:100246907 780.015
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g157 . . . . . Bpe08g01000 . . Cmo16g00443 Cmo04g00593 . . . Car09g00555 . Cpe06g00484 . . . . . . . . . . . . . . . Cone6ag0175 Cone9ag0200 Cone14ag1044 Cone15ag1033 . . . . . . . . . . Bma07g01164 . . . Cmo09g00611 Cma04g00558 Cma16g00411 Car04g00528 Car16g00375 Cpe14g00345 Cpe01g00501 . . . . . . . Cla05g00992 Cam05g1083 Cec05g1091 Cco05g1085 Clacu05g1077 Cmu05g1027 Cre05g1101 . . Chy06g01172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006971 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 0 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14407 PF16719 SAWADEE 5.40E-41 CL0049 Vvi TF