Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g159 ATGGGAACTGAGAATCCTAATCGTCCAAGTTTCCCTGCAAGGCCTGCTGCTACACCCTTTGCAGCTGGTCCCCAGCCTACAATGCCTTTTCTATCATCTGGGCCTACCTCTGGTTTTAGACCTACTCCACCAGGTAGGTTCAGTGATCCATCCTTGCCTTCTGTGCCTTCAGCAAATGCCCCACCAACTCTGGGACCTTTCCAGCGTTTCACAACACCACAAAATCCTTCAACAGCTCAAGCACCTCCTGCACGCCCTCTTCCTGTAGGGCAACCTGTTTTTCCTCCACCAGTTCAACCTCCTGCAGGTCAAGTTCCACCACCACTACTAGATTCTTCATTTTCAGCTTCCAGACCACCGTTTCAGCCATCTTTTCTCCCACCAGAGTCAACTTATCCTGCAGCAAGAGCCAATTTACAGCCATCTTTTCCTGGTTATCCAAGCAAGCAGTCTAATGCAGTTCCACAAGCACCTGCTGTACAGGAACAAATGCAACATCCAGGCACTGGACCTCCTATAGGAGCTGTCCAGGGCTTGATAGAAGATTTCAGCTCTCTTTCTGTTGGATCTGTTCCTGGATCAATTGATCTAGGGATTGATTCAAAAGCATTGCCAAGGCCATTGGAAGGTGACGTTGAACCAAATTCCTTTGCTGAGATGTATCCCATGAATTGTCATTCCAGATATCTACGGCTGACAACTTCTGGTATACCAAATTCCCAGTCATTGGTTTCAAGGTGGCATTTGCCTCTAGGAGCAGTTGTTTGTCCTCTTGCGGTGCCTCCTGATGGGGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCAGAAAGTGGCGTTGCAACATCTGTTCTTTGCTCAATGATGTTTCTGGTGATTATTTCTCCCATTTGGATGCAATTGGCAGAAGAATTGATTTGGATCAACGTCCTGAGCTTATTAAGGGTAGTGTGGAATTTGTTGCTCCCACTGAATATATGGTTCGTCCTCCAATGCCACCACTATATTTTTTCCTCATTGACGTATCACTATCTGCGGTTAGGAGTGGTATGCTTGAGGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGTCGTCGTTGACACAGCCTCAAATGATGGTAGTCTCAGATCTAGATGATATATTTGTTCCATTGCCAGATGATCTCCTTGTGAATTTGTCCGAATCAAGAAGTGTGGTGGAAACATTTCTAGATAGCTTGCCATCTATGTTTCAGGACAATGTCAACCTAGAATCTGCATTTGGTCCAGCTCTTAAGGCTGCTTTTATGGTTATGAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAACTGATAAAGAACATGCATTGAGATTACCTGAAGATCCATTTTATAAGCAAATGGCTGCTGATCTTACTAAGTACCAGATAGCAGTGAATATATATGCTTTCAGTGACAAATACACAGATATAGCCTCCTTAGGAACCTTGGCAAAGTACACTGGTGGTCAGGTATACTACTACCCAAGCTTCTTATCAATCATTCACAAAGATAGGTTGAGACATGAGCTATCCAGGGACCTTACAAGGGAAACTGCCTGGGAAGCTGTCATGCGCATAAGATGTGGCAAAGGTGTGCGGTTTACATCTTATCATGGGAACTTCATGCTAAGATCCACTGATTTGTTAGCCCTTCCAGCTGTAGACTGTGATAAAGCCTTTGCAATGCAGTTATGTCTTGAAGAGACTTTACTAACAACTCAGACTGTATATTTCCAAGTTGCTCTGCTATACACTTCATCTTCTGGAGAAAGGCGAATCAGGGTACATACGGCAGCAGCACCAGTGGTTGCAGATCTGGGAGAGATGTACCGCCAGGCTGATACTGGTGCTGTAGTGTCTTTATTTTGTAGGCTAGCAATTGAGAAAACTTTGTCCCATAAGCTGGAAGATGCACGGAACTCCGTGCAACTAAGGCTTGTCAAGGCCTTCAAAGAATATCGAAATCTCTATGCTGTGCAGCATCGGTTGGGAGGCAGGATGATATATCCAGAATCTTTGAAGCTTTTGCCTTTGTATGCATTAGCACTCTGTAAATCAACACCTCTACGTGGAGGGTATGCTGATGCTCAGCTCGATGAACGCTGTGCAGCAGGTTATACTATGATGACGTTACCTGTTAAAAGATTATTGAAGCTTCTATATCCTAGCTTGATTCGGATTGATGAGTATCTTTTAAAGCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGCTTAGATTCTAGAGGTCTATATATTTATGATGATGGTTTTCGCTTTGTTATTTGGTTTGGAAGAATGCTTTCACCTGAAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGGTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATACTTAAGAAATTTAGGGAGAGTGATCCTTCATATTATCAGCTATGCCATCTTGTAAGACAAGGTGAACAACCAAGAGAAGGTTTCTTTTTACTTGCAAATCTTGTTGAAGACCAGATTGGAGGTACCAATGGCTATGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGA 2835 43.49 MGTENPNRPSFPARPAATPFAAGPQPTMPFLSSGPTSGFRPTPPGRFSDPSLPSVPSANAPPTLGPFQRFTTPQNPSTAQAPPARPLPVGQPVFPPPVQPPAGQVPPPLLDSSFSASRPPFQPSFLPPESTYPAARANLQPSFPGYPSKQSNAVPQAPAVQEQMQHPGTGPPIGAVQGLIEDFSSLSVGSVPGSIDLGIDSKALPRPLEGDVEPNSFAEMYPMNCHSRYLRLTTSGIPNSQSLVSRWHLPLGAVVCPLAVPPDGEEVPIVNFAATGIIRCRRCRTYVNPYVTFTDGGRKWRCNICSLLNDVSGDYFSHLDAIGRRIDLDQRPELIKGSVEFVAPTEYMVRPPMPPLYFFLIDVSLSAVRSGMLEVVAQTIRSCLDELPGSTRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPSMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDLRVYGTDKEHALRLPEDPFYKQMAADLTKYQIAVNIYAFSDKYTDIASLGTLAKYTGGQVYYYPSFLSIIHKDRLRHELSRDLTRETAWEAVMRIRCGKGVRFTSYHGNFMLRSTDLLALPAVDCDKAFAMQLCLEETLLTTQTVYFQVALLYTSSSGERRIRVHTAAAPVVADLGEMYRQADTGAVVSLFCRLAIEKTLSHKLEDARNSVQLRLVKAFKEYRNLYAVQHRLGGRMIYPESLKLLPLYALALCKSTPLRGGYADAQLDERCAAGYTMMTLPVKRLLKLLYPSLIRIDEYLLKPTAQADELKRLPLVAESLDSRGLYIYDDGFRFVIWFGRMLSPEIAMNLLGQDFAADLSKVSLYEHDNEMSRKLMGILKKFRESDPSYYQLCHLVRQGEQPREGFFLLANLVEDQIGGTNGYADWILQIHRQVQQNA* 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2082213 2096660 - Vvi19g159 Vvi19g159 781658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g159 944 MobiDBLite consensus disorder prediction 143 163 - -
Vvi19g159 944 SUPERFAMILY Zn-finger domain of Sec23/24 268 351 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi19g159 944 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 816 942 IPR036180 -
Vvi19g159 944 Gene3D von Willebrand factor, type A domain 354 591 IPR036465 -
Vvi19g159 944 Gene3D Severin 797 921 IPR029006 -
Vvi19g159 944 Pfam Sec23/Sec24 zinc finger 277 315 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi19g159 944 Pfam Sec23/Sec24 beta-sandwich domain 594 677 IPR012990 -
Vvi19g159 944 Gene3D - 224 336 - -
Vvi19g159 944 MobiDBLite consensus disorder prediction 79 107 - -
Vvi19g159 944 Pfam Sec23/Sec24 helical domain 689 792 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vvi19g159 944 MobiDBLite consensus disorder prediction 64 78 - -
Vvi19g159 944 MobiDBLite consensus disorder prediction 1 173 - -
Vvi19g159 944 Gene3D Sec23/Sec24 helical domain 678 940 - -
Vvi19g159 944 PANTHER SEC24-RELATED PROTEIN 152 942 - -
Vvi19g159 944 SUPERFAMILY vWA-like 352 591 IPR036465 -
Vvi19g159 944 Coils Coil 936 944 - -
Vvi19g159 944 Pfam Sec23/Sec24 trunk domain 352 588 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vvi19g159 944 PANTHER SEC23/SEC24 PROTEIN TRANSPORT FAMILY PROTEIN-RELATED 152 942 - -
Vvi19g159 944 SUPERFAMILY beta-sandwich domain of Sec23/24 95 687 - -
Vvi19g159 944 Gene3D - 225 677 - -
Vvi19g159 944 CDD Sec24-like 352 593 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vvi19g159 944 SUPERFAMILY Helical domain of Sec23/24 689 796 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vvi19g159 944 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g159 K14007 SEC24; protein transport protein SEC24 - vvi:100252042 1777.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g159 . . . . . Bpe02g01848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006015 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39