Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g16 ATGTCTTTTTGGCCTGACACTCTCTCTGATGAGGATTTGAAGATTGTGAGGAATGCCGGGATTGTATTGCTTCAGAGGGAAATTCCTGATTTCGTCAACATTCAGGTTGCAAAGGCTGCAAGGGATGCTGGTGTTCCAGTCATTTTGGATGCAGGAGGGATGGATGCACCAATCCCAGTAGAATTACTGAATGTTGTTGATATTCTAAGCCCAAATGAAAGTGAACTTGCACGACTAACCAGAATGCCAACTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGGGTGTTAAAGAAGTCCTGGTGAAACTGGGGGAGAAGGGGTCAGCTTTGTTTGTAAAAGGGGAAGAACCAATTAGACAACCAATCATATATGCTGCAAAAGTTCTCGATACCACCGGAGCAGGCGATACCTTTACTGCTGCATTTGCTGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGCTGCTGCAGCTTCTCTCTGTGTTCAAGTGAAGGGGGCCATTCCAAGCATGCCTGACAGACGGTCAGTTTTGGATCTTCTACAGACCTGTTGA 588 45.41 MSFWPDTLSDEDLKIVRNAGIVLLQREIPDFVNIQVAKAARDAGVPVILDAGGMDAPIPVELLNVVDILSPNESELARLTRMPTESFEQISQAVAKCHEMGVKEVLVKLGEKGSALFVKGEEPIRQPIIYAAKVLDTTGAGDTFTAAFAVAFVEGRSKKECLRFAAAAASLCVQVKGAIPSMPDRRSVLDLLQTC* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 157110 163022 + Vvi19g16 Vvi19g16 781515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g16 195 Gene3D - 1 194 IPR029056 -
Vvi19g16 195 Pfam pfkB family carbohydrate kinase 14 184 IPR011611 -
Vvi19g16 195 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 136 149 IPR002173 GO:0016773
Vvi19g16 195 SUPERFAMILY Ribokinase-like 8 192 IPR029056 -
Vvi19g16 195 PANTHER SUGAR KINASE 1 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g16 K00852 rbsK, RBKS; ribokinase [EC:2.7.1.15] - vvi:100265800 361.688
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g16 . . . . Bpe09g00272 . . Bma13g00918 . Cmo04g00703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00718 . . . . . . . . . . . . . . . . . . . . . . Cla07g00986 Cam07g1059 Cec07g1130 Cco07g1107 Clacu07g1031 Cmu07g1024 Cre07g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009964 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 1 1 33