Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g160 ATGGATTCAGAGCGGGCCCACCACAACAACAGTAGTGGCAGTAGTACCGGCGAGCTCTTCATCTGCTTCACTTCGCGTTTTTCTTCGTCTTCTTCTACTTCCAGGAGGCTGAGGAGCAACGGGAGCATGAAGGGGGGCCAGTCTTCGCCTATGTTTCCCGCAGCGGGGAAGAAGAGGGGGTGTGCGTTTGAGAATCCGGAGCCGTCTTCGCCGAAGGTGACCTGCATTGGGCAGGTGAGAGTGAAGACGAAGAAGCAGGGGAAGAAGATGAGATCGAGGTCGAAGCGAAGAGGGGAGGTGAGTTTTAGGAAGTTAGACCACACGGCTGAAGGGGGGAGGTGGGTTCATCTGCCATTAACGATCTGTGAAGCTTTGAGGGCTTTTGGGGCGGAGTTCAACTGCTTCCTTCCGTGCGCGAGTACGAGTTCTTGTGGGGCTGTGTTCGCGAGGTGGTTGGTGGCTTTGCAGGAAGGCGAAAAGGGGAGAGAGATTGAGCTGGTGGTGGGAGAGGACGAGAGAGCAATGGAGGGGTTTCAAAGGAGGCATGTGCTGGACGACATTGAGATCAAGTTAGAGGAGGAATGGCGGCTCTCGCCAATAGGTTTTGGGAAAACAGCGCCACTACAACTTGATGAAGTGCTTGAAAAGTGTGTATCAGTTGAGAAGATTGAAGAAGAAAACAGTACTGTTTCAGAAGAGAAAGCTACTTTGATTGAACCAACCCAGTTGCTTGAGGACCACGAAGAACAGGAAGAAGAAGAAGACCCAGCATTTCCTCTAGACAGAAGACCCAGCATTTCGTCACCTCCACCTCCGGTGCCCGTACATTCAGAACCAGAAAGCAGAGAAGATACAGCAGCAGAAGCTTTAGCAGAAGAAGACGAAGAAGAAGGAGCAACGGTCGAAGAAAAGGAATCAGAGAAGTCAATGGTCTCAGAAGTCGAAGAAGAAGGGACAGCGACCCATGCGCGACCCGACCCGGAACAAGACCAAAAGGCACGGGAGCCCCTCAAAGATGAAGGCGGTCTAAAGTCAAACGAGAGAGAAACACAACCAAATCTAAAAGGAGAAACCACCGCCACAACAGGTGCCGGCGCCGCCGTCTTGCCGGACTGTTTGCTGCTGATGATGTGCGAGCCGAAGCTCTCAATGGAGGTCTCCAAAGAAACGTGGGTGAACAGTGCGGACTTCATCAGATGGCACCCAGAAAAGCTGAGAGAGAGAATGGATTGGGAGAAGGAATACTTGGATTTGATCTTGGTTCCAAGTGGGTTATTGATCATGTTTGGCTACTATCTCTACCTTCTCTACAGATGCCTAAAGCATACTGATACAACAGTAATTGGCTATGAGAATCACATCAAGAGAACATGGATTGAGAGGATGTTGCAGGTTGAACCAAAGGACAGAGGGCAAGCGATATCTGTGATCGGCAGCAACATGTCCGCGGCAACTTCCATGTCTTCAATATCCCTAACTCTGAGTTCTCTCATTGGAGCATGGGTTGGAAGCTCGTCCCAGAACATCTTCAAGAGTGGTTTTATCTATGGCGACACAAGCTCCTCTACGATTTCCATCAAATACATCAGCCTTCTCGCTTGCTTCCTACTGGCGTTTGCTTGTTTTGTTCAGTCTGCAAGGTACTTTGTTCAGGTGAATTTCTTCATAAGCATGCCAAACAGTGAGATACCTGTGAAATATGTGCAAAAGGCAATGTTAAGCGGTGGGGTTTTCTGGTCAGTTGGCTTAAGGGCTCTATACCTTGCTGTCACCTTGCTGCTGTGGATTTTTGGCCCCATACCAATGTTCGTCTCCTCTGTAATTCTGGTGGTGATTATGCATAATCTTGACACGAATTCAAATCCGCTCCATCAGTTTCAGCCCGCCAACAAACATAACCTGTTGAAGAAGATTGGTGAGGAAATATCTGCAGTTGCAAGCGCCATTGAACACCATGAAAGACCGAGTGAGAATGGATCAAGTGGAGCTTCAGATTCACAACACTGA 2007 49.28 MDSERAHHNNSSGSSTGELFICFTSRFSSSSSTSRRLRSNGSMKGGQSSPMFPAAGKKRGCAFENPEPSSPKVTCIGQVRVKTKKQGKKMRSRSKRRGEVSFRKLDHTAEGGRWVHLPLTICEALRAFGAEFNCFLPCASTSSCGAVFARWLVALQEGEKGREIELVVGEDERAMEGFQRRHVLDDIEIKLEEEWRLSPIGFGKTAPLQLDEVLEKCVSVEKIEEENSTVSEEKATLIEPTQLLEDHEEQEEEEDPAFPLDRRPSISSPPPPVPVHSEPESREDTAAEALAEEDEEEGATVEEKESEKSMVSEVEEEGTATHARPDPEQDQKAREPLKDEGGLKSNERETQPNLKGETTATTGAGAAVLPDCLLLMMCEPKLSMEVSKETWVNSADFIRWHPEKLRERMDWEKEYLDLILVPSGLLIMFGYYLYLLYRCLKHTDTTVIGYENHIKRTWIERMLQVEPKDRGQAISVIGSNMSAATSMSSISLTLSSLIGAWVGSSSQNIFKSGFIYGDTSSSTISIKYISLLACFLLAFACFVQSARYFVQVNFFISMPNSEIPVKYVQKAMLSGGVFWSVGLRALYLAVTLLLWIFGPIPMFVSSVILVVIMHNLDTNSNPLHQFQPANKHNLLKKIGEEISAVASAIEHHERPSENGSSGASDSQH* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2107496 2113818 + Vvi19g160 Vvi19g160 781659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g160 668 PANTHER OS02G0292800 PROTEIN 409 653 - -
Vvi19g160 668 MobiDBLite consensus disorder prediction 27 47 - -
Vvi19g160 668 MobiDBLite consensus disorder prediction 224 362 - -
Vvi19g160 668 MobiDBLite consensus disorder prediction 649 668 - -
Vvi19g160 668 MobiDBLite consensus disorder prediction 287 301 - -
Vvi19g160 668 Pfam Protein of unknown function, DUF599 419 621 IPR006747 -
Vvi19g160 668 MobiDBLite consensus disorder prediction 302 346 - -
Vvi19g160 668 PANTHER - 409 653 - -
Vvi19g160 668 MobiDBLite consensus disorder prediction 27 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g160 - - - vri:117909364 429.869
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g154 Vvi19g160 ECH
Vvi12g227 Vvi19g160 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015380 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2 11