Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g17 ATGACTGGTGTTGGGAAGCGACTGTATTGTTTTTGTCATTGGGGGGGAAAGCGTAAAATTGACACTGCAAGAAATGTGACTTATGAAGGAGGAATTACAGTGGCTGTTCTCCTTACTGAAGGTACAAGCTACAATGCTTTTGTACCGCTTGTGTGCGAGCATCTTGGCATTGACCCAAAAGGAAAAGTACTATACTATTCTGCTAAGCTTGATAAGACACAATATATTTGTTTGAAAAATGATTCTCAATTAAAGGCCATGTTGGAATTGAATGATGAAATAGCTGATGTGTATGTGGCTCATGCTGATGGTGTCTTGAGGTGCTCAAACCCAGCTTTGCAACAAATACCAGTTGAGAGTGGTGCTAATGGGTATGTGGACCATGCAAATGATGGCAGTTCTGGGTCCTCATCAAACATTGCTATGCAACCAATACCAAACAGGAGTAATGAAGAGCCCAATACCAATCTTTGCGGCAATGATATCATGGCTTCTATCCCAAAGCACATTGAAAATTCCCCACTTGTGGCTGCTATGCATAAAAAGGCCATTTTGGAAAAAGGCCAATTATTTGACAGCCCAGAAGAGTTTCAGTCTGCTGTTGAGAAACACTCACTTGAAAATAATTTTGAATATACAGTCAAAGACAACAGTTATGAATATATGAGCGCTCGATGCAAGGTTGATGGTTGTCCATGGAAAGTAACAGCTGTTTGTGAAGGAAACACAAGATTAGTCATGGTGAAAAGATTTATCAACATTCACAAACATTCTGTGCAGGATCAGATGGGTTGCAAACTGGGTTTGAGTTCTAATTTGGTTTCAGGATTGATTGTAGAGAAGCCAAGTGCTGATCCTTGCTCTTTGTCTAAAAGGATACACAAAGATCAATCAGACTTTGATGTTGAAGCGAACTATCAAAAATTATGGAGGGCAAGGAAGAAGGCAAAAGAGGCAATTAATGGGAAGCCAGAGGACTCCTACAAGCTAATTCCATGGATGTGCAAGCGACTTATGGAGTCAATTCCAGGTACAGTTGCCAAATGGACATGTAGTGATGAGAATAAATTCAGGCAGTTATTTGTTGCATATGGATGCTCCATAACCGGTTTCCATAATGGATGTAGGGAGTTGCTGTTTGTTGATGCCTATCACTTGAGTGGGCCATATAAAGACACTTTGTTGTCTGCATCTGCCTTAGATGCAGATGATGGCTTATATCCTCTAGCTTATGGGGTAGTTAATACTGATAATGATGAAAACTGGTTGTGGTTCCTAGAGCATCTAAAGTCTATTATGATGGATCGTCACGTGGTTCTAGTTTCAGACAGGAACCCAAGCTTTCTTTCAGCAGCTAATAAAGTGTTTGGCAGTGATTACAATGCTCACTGTCTCAGCCATTTGAAGGAGAGCCTAGACTACTTCATAAGTAGTAATCCGGTCTTAAAGATGGGAACTGACAAAAAGAAAATAGCACTGAAACTTCTCAACGACATTGCATATGCAAGAACAACTGATAAATATGAAGCAATGTTAGGAAAGATGCGGTTGTTAAAGGAGGAGTTATATGATTGGGTTGTGTCCACTGGACCAGAGCATTGGGCTAATTCTTTGTTCCCTGGAAGGCGATGGGATAAGATCTTCACAAGTCAGGTAGAGTCCTTTAACAGATTTGTGCAGGAGGAAAGAGATTTACCAGTTGTAGGCTTCATTACTGCTCATCGTCTAAAGTTAAGCGAGCTTCTATTGAGAAAGCAGTCAGAGGTGGCGAAGTGGGAAACTCCTGTGGGTGGAAAGATTGAAATGAAAATCAAAGAAAACCAGAACCTAGCAGTTGGTTTGAATCACCATACTATCTCGCCTACTAATATGGAGGTACACGAGAATGGGGAGACTTTTGCAGTGGCATTGGACATGAAATCATGCAGCTGCCGCGAGTGGGAAATGACGGGTATCCCTTGCCGACATGCTTGTTGTGCTGTAACTGCTGCAAACACTAATATTTATGATTATGTGGAGAAATGCTATATGAAGGAGACACAGGAGCAAATATATGCCTCCAACATGCCTTCAGTGCCAATCCATGATATGCCCACCTTGTCTGAGCTCCATGGAAATGACCCCAACTCTCTGGTTGGAAGCATGAGTATTCTTCATCCACCCCCAGATAAAAGACCTCCTGGTCGACCGAGGAAGAAGCAGATTGACTCTCAACTTCAGGACAAGAGGAAACTGCATTGTTCCCGTTGCCATAAAGCTGGTCATAACAGAAGTACCTGCAAGGAACAGCCATCATGCTAG 2301 41.94 MTGVGKRLYCFCHWGGKRKIDTARNVTYEGGITVAVLLTEGTSYNAFVPLVCEHLGIDPKGKVLYYSAKLDKTQYICLKNDSQLKAMLELNDEIADVYVAHADGVLRCSNPALQQIPVESGANGYVDHANDGSSGSSSNIAMQPIPNRSNEEPNTNLCGNDIMASIPKHIENSPLVAAMHKKAILEKGQLFDSPEEFQSAVEKHSLENNFEYTVKDNSYEYMSARCKVDGCPWKVTAVCEGNTRLVMVKRFINIHKHSVQDQMGCKLGLSSNLVSGLIVEKPSADPCSLSKRIHKDQSDFDVEANYQKLWRARKKAKEAINGKPEDSYKLIPWMCKRLMESIPGTVAKWTCSDENKFRQLFVAYGCSITGFHNGCRELLFVDAYHLSGPYKDTLLSASALDADDGLYPLAYGVVNTDNDENWLWFLEHLKSIMMDRHVVLVSDRNPSFLSAANKVFGSDYNAHCLSHLKESLDYFISSNPVLKMGTDKKKIALKLLNDIAYARTTDKYEAMLGKMRLLKEELYDWVVSTGPEHWANSLFPGRRWDKIFTSQVESFNRFVQEERDLPVVGFITAHRLKLSELLLRKQSEVAKWETPVGGKIEMKIKENQNLAVGLNHHTISPTNMEVHENGETFAVALDMKSCSCREWEMTGIPCRHACCAVTAANTNIYDYVEKCYMKETQEQIYASNMPSVPIHDMPTLSELHGNDPNSLVGSMSILHPPPDKRPPGRPRKKQIDSQLQDKRKLHCSRCHKAGHNRSTCKEQPSC* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 192852 198053 - Vvi19g17 Vvi19g17 781516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g17 766 SMART 26again6 640 667 IPR006564 GO:0008270
Vvi19g17 766 MobiDBLite consensus disorder prediction 724 743 - -
Vvi19g17 766 PANTHER POLYPROTEIN, PUTATIVE-RELATED 142 751 - -
Vvi19g17 766 Pfam MULE transposase domain 379 469 IPR018289 -
Vvi19g17 766 ProSiteProfiles Zinc finger SWIM-type profile. 633 665 IPR007527 GO:0008270
Vvi19g17 766 Pfam MuDR family transposase 185 247 IPR004332 -
Vvi19g17 766 Pfam SWIM zinc finger 635 664 IPR007527 GO:0008270
Vvi19g17 766 PANTHER OS09G0268600 PROTEIN 142 751 - -
Vvi19g17 766 MobiDBLite consensus disorder prediction 130 153 - -
Vvi19g17 766 MobiDBLite consensus disorder prediction 696 743 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g17 - - K17604 vvi:104877473 1576.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g17 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000299 1 13 2 0 0 7 0 6 7 5 4 6 5 0 6 6 7 3 1 8 5 10 4 4 1 2 5 12 6 3 139