Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g170 ATGCGATTGTCGTCGGGATCGGTTTCTTCATCGAAGCGAGTGAAAAATCATCGTTCGAACTCTCGAACTCGAACGAAGCACAAAAAACTCGACGCCATATGCGAGAAAACCTATAATCGGAACCGCGGCGTTTCTGGCGAATCAAATGAGGGCAATGGTGGGGCGGGGTCGGCGGGCGTTGATTCAGAGCTGCGGCGGAGTTCGAGGGTCCGCCGCGCTCCTGTTTTGCTTGATTCCTCGCCGCCGCCATCGAAAAAGCGGCGGAGGATCGACTGGAATGGGGAGAGTTTCAGTAAGAGGAGGGAGAAAGGGAAGGCGGTGGTGAGGAGTTGTTCATCACCAGGCGAGGATTCAGGGGAATTGAAAGAAGGAGAGGTTTGGAAATCGAGGTTGAGATCTAGGGCTAAAACTAAAAGGGTGCGTTTTGTGGAGAAGGATAAAGAGGCATCAGCGAGTGGGAAGAGGAAGCTTTTCAGGGATATGGATGGGTGTCGGGAAGAAGAGACTATGGTAGAGAGAGAATTGGATGAGAAGAAGGAGGAATTGGATGGGGGAAAATCCACAGTTGTGAGGTCGAAGAGGCCTGGGAGGATTAAGGCTTCCAATGTTTTGGGGAACAGTGAAGAAGAGATTGATTTGCAGAGTAATAAAGGGGTTGAGGATGAGAGGGTTGAAGTGGAGATGTTAGTGGATAAGGGAGAGCGGGATTTTTTGGTTTTGAACAGTGAAATGGACGGTGGAAACGAGGTTGAAGCAGTAGAGGGTGGAAACGAGGTTGAAGCAGTTGGAAACGAGGTTGAAGCAGGGGTTGGAGCAGTTGGAAACGAGGTTGAAGCAGTGGATGGTGAAAACGAGGTTGAAGCAATTGGAAATGAGGTTGAAGCAGTGGATGGTGGAAACGAGGTTGAAGCCGTGGATGGTGAAACCGCAGATTTATTGGAGAAAGAAAAGAGTGAAAACCAAAATGGTTTATCTGGTAATGACAATGTGGAAACTATTGAACAGAATGATAAGCAGATGGAACATCCAGAGTGTGTGAATGAAGGAGAAAATGAAAGAGATGTTTTAGAAGTTGGAGTTGCTGCAAGCCAAGTGGAAGATGTAGTGGACCATGATGGCCAGGATGCTTGTTTGGACAATCCTGATGAAAAACCTGTGGAACCCGAGAATTCCATGGGGGTTGATAAGTCCAATAAAGCCTTGGCATACACACTTGGCAAACCTCGGATAAAAGAGGGGAGGCGATGTGGTCTTTGTGGTGGAGGAACTGATGGTAAACCTCCGAAGAGAGTAGTCCAGGATATTGGTGAGAGTGAAAATGAGGCATGTAGTGGTTCTTCAGCTTCTGATGAGCCTAACTATGACCCATGGGATGGATTTGGTGATGAACCTAGCTGGCTTGGACGTCTCTTGGGTCCTATAAATGATCGTTATGGTATTGCTGGGATCTGGATTCATCAACACTGTGCTGTTTGGAGTCCTGAGGTTTATTTTGCTGGTTTGGGATGCTTGAAGAATGTTAGGGCCGCACTCTGCAGAGGAAGAGCATTGAAATGCAGTCGCTGTGGGAGGCCAGGTGCAACTATTGGATGTCGTGTTGATCGGTGCCCAAAAACTTACCACTTGCCTTGTGCACGAGCTAATGGTTGCATTTTTGATCATCGCAAATTTCTTATAGCCTGCACAGATCATCGGCATCTCTTCCAACCTCATGGCAATCAATATTTGCAACAGATAAAGAAAATGAAAGCAAAGAAAATGAAATTGGAAATAAGGAAGGTGTCGAATGATGCTTGCCGGAAAGATCTTGAAGCAGAAGAAAAGTGGTTGGAACACTGTGGTGAGGATGAAGAGTTCTTGAAACGGGAGAGCAAGAGGCTCCATCGAGATATATTGAGAATTGCACCTGTGTATATTGGAGGCCCGGGCTCTGAAGGTGAGAAACTATTTCAGGGTTGGGAGTCTGTTGCTGGGCTTCAAGATGTCATCCGGTGCTTGAAGGAGGTTGTCATCTTACCCTTACTGTATCCTGAGTTCTTTAATAATCTGGGGCTTACGCCTCCTAGAGGTGTTCTTTTGCATGGTTACCCTGGAACGGGCAAAACTCTGGTAGTGCGGGCATTAATTGGATCATGTGCTCGTGGTGATAAGAGGATAGCATACTTCGCACGGAAAGGTGCAGATTGTTTAGGAAAGTATGTTGGTGATGCTGAGCGCCAGCTGAGACTCTTGTTTCAGGTTGCTGAGAGATCTCAACCTTCTATCATATTCTTTGATGAGATAGATGGATTGGCACCTTGTCGTACAAGGCAGCAAGATCAGACACATAGTTCAGTTGTGTCCACTTTGCTTGCTCTATTGGACGGTTTAAAATCTCGAGGTTCAGTTGTAGTAATCGGTGCAACAAATCGTCCTGAGGCTGTTGATCCAGCTTTAAGACGGCCTGGAAGATTTGATAGGGAGATCTATTTTCCTCTGCCATCAGTCAAGGATAGAATTTCTATTCTCTCACTGCACACACAAAGATGGCCGAAACCAGTTACCGGACCCTTGCTTAATTGGATTGCAAGAAAAACTGCAGGCTTTGCTGGGGCTGATCTGCAGGCTCTTTGTACTCAAGCAGCCATTATTGCTTTGAAGAGGAACTGCCCCTTTCAAGCACTTGTGTCTCATGCTGGAGAGAAAGCTCCTGATCGTAATCGCTATCCCCTTCCCTCCTTTGCAGTGGAGGAGAGGGATTGGTTGGAGGCTCTTTCATGTGCTCCACCCCCCTGCTCTCGTAGAGAAGCAGGTATGTCTGCAAATGAAGTAGTATCCTCTCCACTTCCCACCCATCTTATATCTTGTCTACTTCGACCACTATCCAGCCTGCTTGTTTCCCTGTATCTTGATGAATGCCTCTATTTACCTCCTCTTCTTTACAAAGCTGCAAAAATGATTAAAAATGTCATTGTTGGTGCTTTGAGGAAGAAGAAAATGCCTAATGATCATTGGTGGGCCCAAGTTAATGATTTGCTTCAAAAGGCAGATGTTATAAAGGAGATAGAAAGGAACCTGTCATGTCTTGGCATTTTAATTGGAGAGGCTGGTTTTCCATTTTCTGATGCTTTAAATGATGATACTGATGAAGACAGGGTGAGGTTTGACCCTTCGAGGGCATACCACAATGGAATTCACACTACTTTGTTGCGAAATATTTCGTATACATCAGGAAAGAAATCAGGATTTCGCATTTTGATTGCTGGGAGTCCCCGGTCAGGCCAGAGGCATCTTGCTTCTTGTATTCTCCACTGTTTTGTTGGGAATGTTGAAATTCAAAAGGTTGATTTGGCTACAATTTCACAGGAAGGACGCGGAGATGTACTAGAAGGGCTAACAAGAATATTGATGAAATGCACTAGTGTGGGTTCATGCATGCTATTCTTGCCTAGAATTGATTTGTGGGCTATAGAGACATCTGATCAAGATGATGAAGAGTGTTCCTCTTCAACAGACCATCAATCATCTGAGGAAGAATTCTGTATAACAAACAGTCAAAGAGCTTCACATGCATGGAGGTCGTTTATTGAGCAGGTGGATTCCATGTGTGTGTCCACGTCTTTGATAATTCTGGCTACTTCAGATGTGCCATATGCAGCATTGCCTAAAAGAATAAGGGAGTTTTTCAAGACTGATATATTGAACTACAGTTGTTCAGCTTCTTCGGAACACACTGTACCCCAATTCTCTGTGCAGGTTGATGGGAACTTCAATCGTGATACGTTGATTGATTCATCAGCAACAGAATTGTCGAGGGATTTGGTTCAGCAGTTTGTTCAGTTGATTCATCATAGAACTCACATTCTTACAAGTATCATGTACTGGCCAATGAAGGTGAGGATAGAGCTCAGTGTCCTGAAGAATCTGTTGCAAAGGTCCCATCTCCACCAAACAGTAGAACTCCCCAGCAATACTAAAAGCAAAGAAAAATTTGGTCTAGTTAGGGGCCTAGTTGCCGTTGGTTTATCAGCATACAGAGGTGCATATGTATCACTTAGAGAAGTTTCCCTTGAGGTTCGAAAGGTTCTGGAGCTCCTGGTTGATCAAATTAATGCTAAAATTCAATCTGGAAAAGATAGATATGAATTTGGTCGTATTTTGTCACAAGTGGCTTGCTTGGAAGATATGGTCAATAGCTGGGTATACACACTACAGAGTTTAGAGGTGGACGGTCAAATGACAGTGGTAAACCCTAAGCCTGGTACTGTAGGATCTTCAAGCTATGCATGTGGGGATGATGTGGATAATCTAATCGAAAGCAAGGAATGTGGACCAAATGTTTCTAACAGAAGCTCACATGAAGAAGTACCAGAAGAAAGGCCTGAAGGATTTACTTCTGAAAATACTGGATTTGTTAATTTGCACAAAGGAGATGTCAATTCTGGTGATCCTAATCTGAAGGAGGGAGTTCCACTCTCAGAAAAGTCTCCACTTCAAACAGCCTTCTTGACTGATTCTGCCCCTGTCGAACAATTTCAGAGTTCTTTGGCTGCCAACTTTTTGGATGGTAAAGTTCCAAACATGCATGATGGGACTTCTAAATCATTCAAGTCAGAAAATTCTGTGAAGTGTATGGTGAATAAGGGAGATTCTGGACTCTGGAGACAGTCTAATGGATTTGCATTCGTGGAACCCGTGGTCCATTCTGAAGATTCCCTATGTAGTGCAGGTGAATTGAGTGGCCTTAAGTTGTCTAGCTGTGGAAAGTTTTGCAACCAGTTCAATGGTTTATCCATGGCGGAGACTGATATTCCACCTCCAGATGGTAAGTCTATCCCTGATGAGCCTATTGTCAATGTCAACGTCTCTTCAATCAAAACTACAAATATTGCAGCTGATTCAGGGGTCATTTGTTTGTATCGTTGTTGTGCTGAATGCCTGTATACCCTCCATAGTTTGATGCAGAAAATTCTCATTCGTGAATGGGAAGTGAATGGGACCTATTGGACGGTAGAGGATGTTCATGATGTTGTTGCATCATTATCTGTTGATCTTCTTTCAGCAGTTAGAAAAAATTATGCTGCTGAAAGTTTCGGCAATTTATTTGACAAAAAGATGAGACAAGAAAATCATGGCAAATTGTCTGAATGTCAGGAAATGAGCATATGTCAGTGTAAAAATTCCGGAAATAGGTTAGTAATGCCAATTGAATGTAGTTGTCACTCATTAAACAAGAGTTTGTCTGCAAAAGCAAATCCTTCTCGCCAGCTTGATTTAAAATTCATCTACAGAGATGGTGTACTGGTCCCTATAGATCTTGACAAGGATGTTTCTTTTCACTGTAAATTCGAGACTTTGTGCCTTTGTTCTCTTATAGAGTGGATAGTAATGACCAAGCAACCTTTTGATTGA 5391 43.93 MRLSSGSVSSSKRVKNHRSNSRTRTKHKKLDAICEKTYNRNRGVSGESNEGNGGAGSAGVDSELRRSSRVRRAPVLLDSSPPPSKKRRRIDWNGESFSKRREKGKAVVRSCSSPGEDSGELKEGEVWKSRLRSRAKTKRVRFVEKDKEASASGKRKLFRDMDGCREEETMVERELDEKKEELDGGKSTVVRSKRPGRIKASNVLGNSEEEIDLQSNKGVEDERVEVEMLVDKGERDFLVLNSEMDGGNEVEAVEGGNEVEAVGNEVEAGVGAVGNEVEAVDGENEVEAIGNEVEAVDGGNEVEAVDGETADLLEKEKSENQNGLSGNDNVETIEQNDKQMEHPECVNEGENERDVLEVGVAASQVEDVVDHDGQDACLDNPDEKPVEPENSMGVDKSNKALAYTLGKPRIKEGRRCGLCGGGTDGKPPKRVVQDIGESENEACSGSSASDEPNYDPWDGFGDEPSWLGRLLGPINDRYGIAGIWIHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCSRCGRPGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHLFQPHGNQYLQQIKKMKAKKMKLEIRKVSNDACRKDLEAEEKWLEHCGEDEEFLKRESKRLHRDILRIAPVYIGGPGSEGEKLFQGWESVAGLQDVIRCLKEVVILPLLYPEFFNNLGLTPPRGVLLHGYPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAERSQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVKDRISILSLHTQRWPKPVTGPLLNWIARKTAGFAGADLQALCTQAAIIALKRNCPFQALVSHAGEKAPDRNRYPLPSFAVEERDWLEALSCAPPPCSRREAGMSANEVVSSPLPTHLISCLLRPLSSLLVSLYLDECLYLPPLLYKAAKMIKNVIVGALRKKKMPNDHWWAQVNDLLQKADVIKEIERNLSCLGILIGEAGFPFSDALNDDTDEDRVRFDPSRAYHNGIHTTLLRNISYTSGKKSGFRILIAGSPRSGQRHLASCILHCFVGNVEIQKVDLATISQEGRGDVLEGLTRILMKCTSVGSCMLFLPRIDLWAIETSDQDDEECSSSTDHQSSEEEFCITNSQRASHAWRSFIEQVDSMCVSTSLIILATSDVPYAALPKRIREFFKTDILNYSCSASSEHTVPQFSVQVDGNFNRDTLIDSSATELSRDLVQQFVQLIHHRTHILTSIMYWPMKVRIELSVLKNLLQRSHLHQTVELPSNTKSKEKFGLVRGLVAVGLSAYRGAYVSLREVSLEVRKVLELLVDQINAKIQSGKDRYEFGRILSQVACLEDMVNSWVYTLQSLEVDGQMTVVNPKPGTVGSSSYACGDDVDNLIESKECGPNVSNRSSHEEVPEERPEGFTSENTGFVNLHKGDVNSGDPNLKEGVPLSEKSPLQTAFLTDSAPVEQFQSSLAANFLDGKVPNMHDGTSKSFKSENSVKCMVNKGDSGLWRQSNGFAFVEPVVHSEDSLCSAGELSGLKLSSCGKFCNQFNGLSMAETDIPPPDGKSIPDEPIVNVNVSSIKTTNIAADSGVICLYRCCAECLYTLHSLMQKILIREWEVNGTYWTVEDVHDVVASLSVDLLSAVRKNYAAESFGNLFDKKMRQENHGKLSECQEMSICQCKNSGNRLVMPIECSCHSLNKSLSAKANPSRQLDLKFIYRDGVLVPIDLDKDVSFHCKFETLCLCSLIEWIVMTKQPFD* 1797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2237269 2251390 - Vvi19g170 Vvi19g170 781669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g170 1796 MobiDBLite consensus disorder prediction 171 191 - -
Vvi19g170 1796 Gene3D - 653 927 IPR027417 -
Vvi19g170 1796 CDD AAA 685 826 - -
Vvi19g170 1796 Gene3D - 827 919 - -
Vvi19g170 1796 MobiDBLite consensus disorder prediction 1 124 - -
Vvi19g170 1796 MobiDBLite consensus disorder prediction 82 107 - -
Vvi19g170 1796 MobiDBLite consensus disorder prediction 1437 1461 - -
Vvi19g170 1796 Pfam AAA+ lid domain 852 882 IPR041569 -
Vvi19g170 1796 ProSiteProfiles Extended PHD (ePHD) domain profile. 445 565 IPR034732 -
Vvi19g170 1796 Pfam ATPase family associated with various cellular activities (AAA) 691 826 IPR003959 GO:0005524|GO:0016887
Vvi19g170 1796 ProSitePatterns AAA-protein family signature. 796 814 IPR003960 GO:0005524|GO:0016887
Vvi19g170 1796 MobiDBLite consensus disorder prediction 171 190 - -
Vvi19g170 1796 PANTHER AAA DOMAIN-CONTAINING 61 1283 IPR045199 -
Vvi19g170 1796 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 61 1283 - -
Vvi19g170 1796 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1315 1792 - -
Vvi19g170 1796 SMART AAA_5 687 828 IPR003593 -
Vvi19g170 1796 Pfam PHD-like zinc-binding domain 486 565 - -
Vvi19g170 1796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 567 IPR013083 -
Vvi19g170 1796 PANTHER AAA DOMAIN-CONTAINING 1315 1792 IPR045199 -
Vvi19g170 1796 Coils Coil 161 181 - -
Vvi19g170 1796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 653 885 IPR027417 -
Vvi19g170 1796 MobiDBLite consensus disorder prediction 436 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g170 - - - vvi:100243511 2410.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60