Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g172 ATGGATGCTTTCCATTCCCAACACCAAAAACACAAGAAGAGGCTAACTCAAGACCAAGTGAGGCTTCTAGAGACAAGCTTCGACCATGGGAAGAAGCTTGAGCCCGAGCGCAAGCTCCACCTCGCGCGGGAGCTTGGAGTGCCGCCTAGACAAGTCGCTATTTGGTATCAAAACAAGCGAGCGCGATGGAAGACGCAGAACTTGGAGCTTGACTATAATGTGATTAGAGTAAGGCTAGAGCATGCCTTGATCGAAAAAAGGAGACTCGAGAGAGATGTCATAAGACTCCAAGGGGAGTTGGAGAAGGCGCATGAGATGTTGCATGCTTTGAACTATGCAAACCCTAATCCTCCTCCTATTGTTTCTACTGTACTCTCTAGTATTTCTTGCGATGAGGGAGGTAGCACTTTGGAGAATAACGAGGAATTTCAATTCGAAAATCTCTATGCGTCTTTGATGGGAATATACGGGTCTTGGGCTTTTGGGCTCAAATGTAAAAGCCCATTCCAAGTGCATTCTGGTTCAAAACGGTGCGTTTCGGTGAGGTTTGAGGAACTAGAACAATGGCGTCGACCTCCGCTGCTGCTTCCCGCGACAATGGCGTCCCCGGAAGACTCAGGAACGCCGCTTCCACTCTCTACTCCGATAACCAATCTCTCATTGCTGAAATTTCGAAAGGCTATGATTCTGATGAAGGAAGTGGCGGTTGATTTGGAGAGGGACGGCCAGTCTCAGATGGTGAAAGAGCTTGAAGATGCCGTTGTTGAGTTATTGGGAACATCAGAAGACTGTACACAATTTTCAGCTGCAATTCAGTCTGTTGGAAATGAGCACCAACCCAGGCCTGAGTTAACTGATTTTAAGAAGTTATTTGAGGATGAGGTTGCAAAGCTCAAGGCCAGTTCCTCTTTTGCTCCACAAAGCCATCCATTATTACGTCAATTCAGGGAAGCTGTTTGGAATGTTCACCATGCAGGACAGCCAATGCCAGGTGATGAGCAGGAGGACATTGTAATGACCAGTACACAATGCAACCTCTTGAATATTACTTGCCCATTAAGTGGAAGACCTGTTACTGAATTAGCAGATCCAGTTCGCAGTGTGGATTGCAAGCATATTTATGAAAAGAAGGCCATCTTGCACTACATAAAATCCAAACATGGACGCGCTCAATGTCCTGTTGCAGCTTGCCCGAAAATACTGCAGGCAGAAAGGGTAGTGTGTGACGCATTGTTACAAATTGAAATTGATGAAATGAAATCAATGAGTAAGCAACCTGGTCGAACTGATGTAATAGAAGATTTCACCGAGCTTGATGATGATGATGATGAAGAAGAAGAAGACGACTGA 1350 45.7 MDAFHSQHQKHKKRLTQDQVRLLETSFDHGKKLEPERKLHLARELGVPPRQVAIWYQNKRARWKTQNLELDYNVIRVRLEHALIEKRRLERDVIRLQGELEKAHEMLHALNYANPNPPPIVSTVLSSISCDEGGSTLENNEEFQFENLYASLMGIYGSWAFGLKCKSPFQVHSGSKRCVSVRFEELEQWRRPPLLLPATMASPEDSGTPLPLSTPITNLSLLKFRKAMILMKEVAVDLERDGQSQMVKELEDAVVELLGTSEDCTQFSAAIQSVGNEHQPRPELTDFKKLFEDEVAKLKASSSFAPQSHPLLRQFREAVWNVHHAGQPMPGDEQEDIVMTSTQCNLLNITCPLSGRPVTELADPVRSVDCKHIYEKKAILHYIKSKHGRAQCPVAACPKILQAERVVCDALLQIEIDEMKSMSKQPGRTDVIEDFTELDDDDDEEEEDD* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2259484 2272052 - Vvi19g172 Vvi19g172 781671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g172 449 CDD SPL-RING_NSE2 349 418 IPR004181 GO:0008270
Vvi19g172 449 Pfam Homeodomain 10 64 IPR001356 GO:0003677
Vvi19g172 449 Pfam Zinc-finger of the MIZ type in Nse subunit 335 397 IPR004181 GO:0008270
Vvi19g172 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 430 IPR013083 -
Vvi19g172 449 CDD homeodomain 10 67 IPR001356 GO:0003677
Vvi19g172 449 Coils Coil 79 106 - -
Vvi19g172 449 ProSiteProfiles 'Homeobox' domain profile. 6 66 IPR001356 GO:0003677
Vvi19g172 449 PANTHER UNCHARACTERIZED 223 441 IPR026846 GO:0000724|GO:0019789|GO:0030915
Vvi19g172 449 MobiDBLite consensus disorder prediction 434 449 - -
Vvi19g172 449 MobiDBLite consensus disorder prediction 422 449 - -
Vvi19g172 449 ProSiteProfiles Zinc finger SP-RING-type profile. 333 421 IPR004181 GO:0008270
Vvi19g172 449 SUPERFAMILY Homeodomain-like 8 75 IPR009057 -
Vvi19g172 449 Gene3D - 5 71 - -
Vvi19g172 449 SMART HOX_1 8 70 IPR001356 GO:0003677
Vvi19g172 449 ProSitePatterns 'Homeobox' domain signature. 41 64 IPR017970 GO:0000981|GO:0006355
Vvi19g172 449 SUPERFAMILY RING/U-box 350 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g172 K22756 NSMCE2, NSE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-] - vvi:100253746 467.618
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g172 . . . . Bpe09g00244 . . . . . Cma01g01231 . Car01g01052 . Sed04g2426 . Cpe02g00685 Bhi09g03470 Tan01g4359 Cmetu07g1823 . Hepe01g1414 . . Cla11g01732 Cam11g1801 Cec11g1822 Cco11g1828 Clacu11g1960 Cmu11g1770 . . . . . Lsi04g02041 Csa04g02311 Chy07g00047 Cme07g00565 . . . Bda12g00828 . . Bma07g01160 . . Cmo01g01284 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009484 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14408 PF11789 zf-Nse 9.80E-14 CL0229 Vvi TF