Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g175 ATGACTCCCACATATGCCAAAACTATAACTAACTTCAACCACCTAGCTCAGCAAATCAAGAAATGTTCCATGGTCAAGGAGCTGGAATCTGTATATGCCTCCATGATAAAGGCCAATGCAAACCAAGACTGTTTCTTGATGAATCAATTCATCGCTGCATGTTCCATCTTTCATAGAATAGATTATGCAATTCTAGCATTTACCCACATGCAGGAGCCCAATGTTTTTGTGTACAATGCCATGATCAGGGCCCTTGTTCAATGTTATCATCCAGTTCAAGCTCTAGACTGTTATTTAGATATGGTCCAAGCTCAAGTCTCTCCTACTAGTTTTACATTTTCATCGTTGGTTAAGGCTTGTAGCTTGGTGTCTGAATTGGGGTTTGGAGAAGCTGTGCATGGTCATATTTGGAAATATGGGTTTGATTCTCATGTGTTTGTTCAGACTGCTTTGGTTGATTTCTATGGGAATGCTGGTAAAATTGTTGAGGCGAGGAGGGTGTTTGATGAAATGTCTGAGAGAGATGTTTTTGCATGGACCACGATGATTTCGGTTCATGCCAGGACTGGGGATATGAGTTCTGCGAGGCAGTTGTTTGATGAAATGCCGGTGAGGAACACTGCATCATGGAATGCTATGATTGATGGGTATTCAAGATTGAGGAACGTGGAATCTGCGGAGCTGTTGTTTAGTCAAATGCCCAACAGGGATATAATTTCATGGACAACCATGATCGCTTGCTATTCTCAGAACAAACACTTAGACAAATCCCTTGTGGTATTCTTTAAATTGCGGAAGAAGAACCTGTTCTGTTGGAACTCAATAATCGAAGGGCTTGCAGTTCACGGTTATGCAGAAGAAGCGCTGGCCATGTTTAGCAGGATGCAGAGGGAGAAAATCAAACCAAATGGGGTTACCTTCATTAGTGTTCTAGGCGCCTGCACTCACGCAGGACTCGTTGAAGAAGGTCGCAAGAGGTTTCTAAGCATGAGCCGTGATTTTTCCATCCCTCCCGAGATTGAACACTATGGTTGCATGGTTGATCTATTGGGCAAGGCCGGTCTGCTTGAAGATGCATTGGAATTGGTAAGGAGCATGAGAATGGAACCAAATTCTGTTATATGGGGTGCATTGTTGGGTGGCTGCAAGCTTCATAGGAACTTGAAGATTGCTCAAGTTGCAGTCAATGAATCGAAGGTTTTGGAGCCAAACAATAGCGGGTATTACACCCTTTTGGTTAACATGTATGCAGAAGTAAATCGATGGAGCGAGGTAGCGAATATCAGGGCAACAATGAAGGAACTAGGAGTGGAGAAGACGAGCCCCGGGTCCAGTTGGATTGAAATGGATAGAAAAATTCATCAGTTTGCAGCTTCTGATAAATCTCACCTGGCTTCTGACGAGATTTACACTTTGCTGGTTGAGTTAGATGGGCAGCTGAAGCTATCTGGCTATGTACCCGAACTTGGATCTGTTCCATTATAG 1485 43.43 MTPTYAKTITNFNHLAQQIKKCSMVKELESVYASMIKANANQDCFLMNQFIAACSIFHRIDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKHLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKSHLASDEIYTLLVELDGQLKLSGYVPELGSVPL* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2291818 2293513 - Vvi19g175 Vvi19g175 781674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g175 494 PANTHER BNAC05G04200D PROTEIN 254 489 - -
Vvi19g175 494 PANTHER BNAC05G04200D PROTEIN 12 253 - -
Vvi19g175 494 Gene3D Tetratricopeptide repeat domain 206 266 IPR011990 GO:0005515
Vvi19g175 494 Gene3D Tetratricopeptide repeat domain 5 125 IPR011990 GO:0005515
Vvi19g175 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 205 IPR002885 -
Vvi19g175 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Vvi19g175 494 Pfam PPR repeat family 267 314 IPR002885 -
Vvi19g175 494 Pfam PPR repeat family 73 120 IPR002885 -
Vvi19g175 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Vvi19g175 494 Pfam E motif 385 448 IPR046848 -
Vvi19g175 494 Gene3D Tetratricopeptide repeat domain 126 205 IPR011990 GO:0005515
Vvi19g175 494 Gene3D Tetratricopeptide repeat domain 267 465 IPR011990 GO:0005515
Vvi19g175 494 TIGRFAM PPR: pentatricopeptide repeat domain 239 269 IPR002885 -
Vvi19g175 494 TIGRFAM PPR: pentatricopeptide repeat domain 77 109 IPR002885 -
Vvi19g175 494 TIGRFAM PPR: pentatricopeptide repeat domain 209 238 IPR002885 -
Vvi19g175 494 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Vvi19g175 494 TIGRFAM PPR: pentatricopeptide repeat domain 148 176 IPR002885 -
Vvi19g175 494 TIGRFAM PPR: pentatricopeptide repeat domain 178 204 IPR002885 -
Vvi19g175 494 TIGRFAM PPR: pentatricopeptide repeat domain 343 367 IPR002885 -
Vvi19g175 494 PANTHER OS01G0913400 PROTEIN-RELATED 12 253 - -
Vvi19g175 494 PANTHER OS01G0913400 PROTEIN-RELATED 254 489 - -
Vvi19g175 494 Pfam PPR repeat 342 368 IPR002885 -
Vvi19g175 494 Pfam PPR repeat 178 205 IPR002885 -
Vvi19g175 494 Pfam PPR repeat 209 237 IPR002885 -
Vvi19g175 494 Pfam PPR repeat 149 175 IPR002885 -
Vvi19g175 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g175 - - - vvi:100264065 824.698
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011559 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 1 0 1 1 0 1 1 1 1 1 28