Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g18 ATGGCGGAAGCGCTGATCTCCAACCCGGAAGCCAATACTCAGGAAAATGGTCCCTACTCGGCTTCGCCGGACCCGTCTTCAACTGGGTCCTTCTTCCACAGAAGAATCGAGTTTCATCTCGCAAGAAAGCCTTTCTCCGGCTTCACTAACGGCGGCGGAGGTTTTCGACTAGAGACTCTGAACCCCACCACCGATCCGAAGCGGCCCGGGCACAGTACGGGTCCGGCGGCTTCGAGTGGGAAGAAGCAAGATGGGTCTGATCATGTGGAGAACGGGTTGGATCCGGAGCTCAGTATTGGGATCACATTTAGGAGAATTGGTGCTGGTTTGGAAAATCTGGGAAATACCTGTTATCTTAATTCAGTATTGCAATGCCTGACTTATACAGAGCCTTTAGCAGCATATTTGCAAAGTGGAAAGCATCAAAATTCTTGTCGTATTGCTGGATTTTGTGCTTTATGTGCTATCCAGAAGCATGTCAGCCGTGCTCTTCAGTCAACTGGAAGAATATTAGTACCCAAGGATCTTGTCTCTAACTTACGGTGCATATCTCGTAACTTCAGAAATGCAAGACAGGAGGATGCACATGAGTATATGGTACATTTGCTTGAAACAATGCACAAATGTTGCTTACCTTCAGGTGTGCCAAGTGAATCCCCTAGTGCTTATGAGAAAAGTTTGGTGCACAAGATCTTTGGTGGTCTCCTTCGTAGTCAGGTGAAATGCATGCAGTGCTCCTACTGCTCCAACAAATTTGATCCATTTCTAGATTTGAGTCTTGAAATATTCAAAGCAGATTCCTTGCATAAGGCCCTTGTGCACTTCACAGCAACAGAACAATTAGATGGTGGTGAGAGACAGTACCAATGTCAGCGGTGCAAACAGAAAGTTAAGGCTCTTAAACAGCTCACAGTTCACAAGGCACCTTATGTTCTGACCATCCATCTAAAGCGGTTTGGTGCACATGATCCTGGACAAAAGATTGACAAGAAAGTTCATTTTGGTCCTACAATGGACTTAAAACCTTTTGTCAGTGGTTCCTATGAAGAAAATTTGAAGTATACTCTTTATGGGGTTTTGGTCCATGCCGGTTGGAGCACCCATTCCGGCCACTACTACTGCTTTGTTCGCACTTCAACTGGCATGTGGTACTCCCTTGATGACAATCGGGTTGTCCAGGTTAGTGAGAGGACTGTTTTGGATCAGAAGGCCTACATGTTGTTTTATGTTCGTGATAGAAAAAACTTCACTCCAAAGAAATCCATTGATGTTGTTCAGAAACAAAACTTGGTTGTGAGTGCCATAGCAAAGAAAACATGTTCCAGTATAAGTCAAGGTATAAAGGAAACCATTCAAAATCGACCAGTCGAGAAAAGTTTAAGTGGTGCCATTGCTTCTGCTGCTGTAACCACAAATGATGTATCTAATGTTGGCTTGTCAAAGGAGATTCTATCAAAAGAAGCATCAGCTCCAAAAAGTAGCAGGTTCTCATCTGAATGCTTGGCATTGAAAAATGGTCCCATGTCTGAACCTCCACCTAATGTAGCATTATCAAAACAGCGAGTGAAGGAGCCTTCTGTTCTGAACCCTACTCTGGAGAAATCCATGCCACCATCAGCTCCATCTGTTAAGGGAAGTGGTATCACCAATCTTGACAATGCTGTTGCAGCTTCAACTGGTGCCAAATTTAATGTGCGCAGTGAGGATGAAATTTCTAAGAAAGATCAGGGCATCTTAGATGTCATACAAGCCAACTGCCTCGGTTCCCATAATTCTGCTGCCGATAAGCCTGACTCAGAGAAGACCTCTCCGAAGGTTGGTATTATTTCAAATGCAAATGGAACATTGGAGAAAATAGAACCTGTTAAGTTTCCAAATGGTCCAGGTGGTGAAAGTTTTCAGGTTGGTAGTATACCCAAAGGGAGTGCTGCTGGTGATTTACTTATTGAAAACGTTGATGATGGTGGCCAGAAATTATCAACCAAGTCAGTAGAATTTTCTAGCCCGCCAAGCATGATGAATGGATCTATCCACATGAAAACACTTGATTGCAAGCCTCACAGAAAACTAAAAAAGAAGCACATGAAGAGAAGCATGCATCTTGTCTCAAACAACCTCTTCCGAGCATCCTTGAGCCTGCGAAAGAAGAAAAAGCAGAGAAGGAGCAAACGGCACACTTCTGACATCAAGAATCTCACTCAAGAACGCTTACTGGAAGCAGGTTGTTTATCTATTGATCAGGGCCCATCCACATCTGATAAAACCCAGACAATTTCTGTGGGTCCAACTAATCCTCAGGGAAAAAGGGTTAAGCATGGTACCAAAAAGGGAGATAAGAGAACTGCTGGGAAGGATGTAAAAACCTCTAATAGTGAATGTCTGATGGATACCATGGATATGGAGATCAGAGACAGAATTGGTCAGGAGGGAGCAATGCTTGCAACAGATAAAGAACCACAAAAGAGCTCTAGCTCAGTTGCAAAACAGTGGGATGCACAAGGTTCTGATAGTTTAAATGATAGTAAGAGAGATCGGATGCAGAATGGATTGATGAGTATGCTTACCAGAGGTCTAGACAAGACAATTGTTGCTCGGTGGGACGAGATAGAATGGCCTTCAAACCGGGTTATGGAATCAAGAAGTGTGGAGGGTGTAACCATCGGTTATGTACCAGATGAATGGGACGAAGAATATGATCGGGGCAAGAGAAAGAAAGTAAGGAGATGTGAAGAAATGAAATATACATGA 2748 43.7 MAEALISNPEANTQENGPYSASPDPSSTGSFFHRRIEFHLARKPFSGFTNGGGGFRLETLNPTTDPKRPGHSTGPAASSGKKQDGSDHVENGLDPELSIGITFRRIGAGLENLGNTCYLNSVLQCLTYTEPLAAYLQSGKHQNSCRIAGFCALCAIQKHVSRALQSTGRILVPKDLVSNLRCISRNFRNARQEDAHEYMVHLLETMHKCCLPSGVPSESPSAYEKSLVHKIFGGLLRSQVKCMQCSYCSNKFDPFLDLSLEIFKADSLHKALVHFTATEQLDGGERQYQCQRCKQKVKALKQLTVHKAPYVLTIHLKRFGAHDPGQKIDKKVHFGPTMDLKPFVSGSYEENLKYTLYGVLVHAGWSTHSGHYYCFVRTSTGMWYSLDDNRVVQVSERTVLDQKAYMLFYVRDRKNFTPKKSIDVVQKQNLVVSAIAKKTCSSISQGIKETIQNRPVEKSLSGAIASAAVTTNDVSNVGLSKEILSKEASAPKSSRFSSECLALKNGPMSEPPPNVALSKQRVKEPSVLNPTLEKSMPPSAPSVKGSGITNLDNAVAASTGAKFNVRSEDEISKKDQGILDVIQANCLGSHNSAADKPDSEKTSPKVGIISNANGTLEKIEPVKFPNGPGGESFQVGSIPKGSAAGDLLIENVDDGGQKLSTKSVEFSSPPSMMNGSIHMKTLDCKPHRKLKKKHMKRSMHLVSNNLFRASLSLRKKKKQRRSKRHTSDIKNLTQERLLEAGCLSIDQGPSTSDKTQTISVGPTNPQGKRVKHGTKKGDKRTAGKDVKTSNSECLMDTMDMEIRDRIGQEGAMLATDKEPQKSSSSVAKQWDAQGSDSLNDSKRDRMQNGLMSMLTRGLDKTIVARWDEIEWPSNRVMESRSVEGVTIGYVPDEWDEEYDRGKRKKVRRCEEMKYT* 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 201969 211104 - Vvi19g18 Vvi19g18 781517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g18 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 354 372 IPR018200 GO:0004843|GO:0006511
Vvi19g18 915 Gene3D Cysteine proteinases 105 422 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 1 30 - -
Vvi19g18 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 440 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 812 843 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 745 764 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 711 732 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 532 547 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 817 836 - -
Vvi19g18 915 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 108 412 IPR028889 -
Vvi19g18 915 MobiDBLite consensus disorder prediction 52 91 - -
Vvi19g18 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 440 - -
Vvi19g18 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 109 124 IPR018200 GO:0004843|GO:0006511
Vvi19g18 915 SUPERFAMILY Cysteine proteinases 107 411 IPR038765 -
Vvi19g18 915 MobiDBLite consensus disorder prediction 745 790 - -
Vvi19g18 915 Coils Coil 715 735 - -
Vvi19g18 915 Pfam Ubiquitin carboxyl-terminal hydrolase 109 409 IPR001394 GO:0004843|GO:0016579
Vvi19g18 915 MobiDBLite consensus disorder prediction 711 725 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 528 547 - -
Vvi19g18 915 MobiDBLite consensus disorder prediction 7 29 - -
Vvi19g18 915 CDD Peptidase_C19E 107 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g18 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - vvi:100246880 1774.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00807 . . . . . . . Cma04g00641 . Car04g00597 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004849 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 5 1 1 36