Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g182 ATGCATTCCAGATTCCAAATGTTGAAACTCTATTCCCGCGTAAACACCCAACTGAAATTCAAATTCGAATTCCTAACCCAACCCAGAAGAAAGCACCCGATCCTTCCTCACATTATTCCCAATCAGCATTTTCACAGCACACAGAACCCGAACTCTGAATTTAATTTCAGAGAAGGGTTTGAAAGAGACGAGTTTGTTGGCTTGGTTGCTGATCCCGGCAAACGCGAGGTGTTCCGACGAGACCCAGATGGCGAAACCGCTCTCGAAGTCCAAAATCTCCTCAAAACTTACAGAGACAGCTCAGTTTCTGAGATCGAGGGAGCTCTCCACCAATGCAGACTCTCACTGACCGATGATTTGGTCCTCGATGTGCTTAAACGGCACCGTTCCGACTGGAGACCCGCATATGTGTTCTTCAATTGGGCGTCCAGATGTGGTATAGAAAGTGGATATTCACCTGGGTGTGGCGTCCACAATGAAATTCTTGACATTCTAGGTCGAATGAGGCGGTTCCATGAAATGACCCAATTGTTCGACGAAATGTCTAAGAGAAAAGGCCTTGTCAATGAGAGGACTTTTGGGGTTTTGCTTAATAGATATGCAGCTGCACATAAGACAGAAGAGGCAGCAGTGAAGATTTTCTATAAGAGGAAAGGGGCTTGGATTCGATCTATGAATGTCATCCTCAATGGATGGTGTGTGCTTGGGAGTTTGCGTGAAGCCAAGAGGTTTTGGAATGATATAATCACATCTAAGTGCAAACCTGATAAGTTCACATACGGGATTTTCATAAATTCATTGACAAAGGCAGGGAAATTGAGTACTGCTGTGAAGCTGTTTCAAGCAATGTGGGAGAAGGGGTGCAATCCAGATGTGGCAATCTGCAATTGCATCATTGATGCATTGTGTTTCAAGAAGCGGATTCCCGAAGCTCTGGAAGTTTTGAGGGAGATGAATGAGCGAGATTGCCAGCCTGATGTCGCGACTTACAACTCGCTCATCAAGCATTTGTGCAAGATTCAGCGGTTTGAAAAGGTTTATGAGCTGTTGGATGACATGGAACAGAAGGGTTGTTTGCCAAATGCTAGAACTTATGGTTACTTGTTGAAGTCCACAAAGAAACCAGAGGAAGTTCCTGGGATTTTGGAGAGGATGGAGAGAAATGGATGCAGGATGAACAGTGATTGCTACAATTTAATTTTAAAGTTGTATATGGACTGGGGTTATGAATTAAAATTGAGGTCTACTTTGGATGAGATGGAGAGAAATGGGATGGGACCTGATCAGCGAACATATACTATTATGATTCATGGGCTTTATGACAAGGGAAGGATGGACGATGCCTTGAGTTATTTCAAGCAGATGACATTGATGGGAATGGTGCCAGAGCCAAGGACAACGTTGTTGGTGAATGCCATGAACATCAAGTTAAAGGAAAGAGAAGCTGAACCAGAGGGGAAGGGGGCGAGAAACAAGGCTGATTCCATAAGGCCTTCAACTAGAAGGGGGAAGAAGAAGAGGGCGTTTTAA 1530 44.38 MHSRFQMLKLYSRVNTQLKFKFEFLTQPRRKHPILPHIIPNQHFHSTQNPNSEFNFREGFERDEFVGLVADPGKREVFRRDPDGETALEVQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAAVKIFYKRKGAWIRSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGKGARNKADSIRPSTRRGKKKRAF* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2356591 2358344 - Vvi19g182 Vvi19g182 781681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g182 509 Pfam PPR repeat family 290 339 IPR002885 -
Vvi19g182 509 Pfam PPR repeat 424 456 IPR002885 -
Vvi19g182 509 Pfam PPR repeat 253 283 IPR002885 -
Vvi19g182 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Vvi19g182 509 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Vvi19g182 509 TIGRFAM PPR: pentatricopeptide repeat domain 431 462 IPR002885 -
Vvi19g182 509 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Vvi19g182 509 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Vvi19g182 509 TIGRFAM PPR: pentatricopeptide repeat domain 158 185 IPR002885 -
Vvi19g182 509 TIGRFAM PPR: pentatricopeptide repeat domain 225 256 IPR002885 -
Vvi19g182 509 Pfam PPR repeat 161 184 IPR002885 -
Vvi19g182 509 Pfam PPR repeat 224 252 IPR002885 -
Vvi19g182 509 MobiDBLite consensus disorder prediction 480 498 - -
Vvi19g182 509 PANTHER OS01G0151900 PROTEIN 222 495 - -
Vvi19g182 509 PANTHER OS01G0151900 PROTEIN 41 219 - -
Vvi19g182 509 Gene3D Tetratricopeptide repeat domain 355 502 IPR011990 GO:0005515
Vvi19g182 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Vvi19g182 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Vvi19g182 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Vvi19g182 509 Gene3D Tetratricopeptide repeat domain 99 219 IPR011990 GO:0005515
Vvi19g182 509 Gene3D Tetratricopeptide repeat domain 220 284 IPR011990 GO:0005515
Vvi19g182 509 Gene3D Tetratricopeptide repeat domain 285 354 IPR011990 GO:0005515
Vvi19g182 509 Pfam Pentatricopeptide repeat domain 372 404 IPR002885 -
Vvi19g182 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 219 - -
Vvi19g182 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 222 495 - -
Vvi19g182 509 MobiDBLite consensus disorder prediction 480 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g182 - - - vvi:100252048 1007.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g182 . Blo03g01555 . . . Bpe08g01011 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005725 1 10 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 39