Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g189 ATGGCTGAAGCTGCGGCAATAATGGATGCGACTGGGTCTAGGTTTAGTTCATTGGAGTTGATCGGAAGAGGTTCATTTGGTGACGTCTATAAAGGGTTTGATAAAGAGCTTAACAAAGATGTTGCTATTAAAGTAATTGATTTGGAAGAAGCAGAAGATGAAATTGAGGACATTCAGAAGGAAATCTCAGTTTTATCACAATGTCGATCTCCATATATTACCGAGTACTATGGTTCTTATCTGCACCAAACCAAACTATGGATAATAATGGAATACATGGCTGGCGGTTCTGTTGCTGACCTAATCCAATCTGGTCAACCACTGGATGAAATGTCTATAGCTTGCATTTTACGTGATCTACTCCATGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAGGTTGCAGATTTTGGCGTTTCTGCGCAATTAACAAGGACAATCTCAAGGAGGAAGACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAGGCGGATATTTGGTCTCTGGGAATAACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTCCATCCAATGAGAGTGCTTTTTATAATACCTCGAGAAAATCCGCCTCAGCTGGATGAGCATTTTTCTCGCCCCATGAAGGAATTTGTTTCATTGTGTTTAAAGAAGGTTCCTGCTGAGAGGCCAAGTGCCAAGGAACTTCTAAAGCACCGCTTTATTAGGAATGCAAGGAAAAGTCCAAGGCTTTTGGAGAGAATAAGAGAGCGCCCAAAATACCAAATAAAGGACGATGCAGAAACCCCCAGGAATGGTCCTAAAGGTATTGGGGAAGGATCTGACACTGTGAAGGTGACAAGAGATTCAAGGGGTGAAGAAACTGTTCGAGCCAGTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCTAGAGAAAGGAAACCAGAGGTTTCATATCAGGCTCCCTCAAGAAAAACTGCAGACAGTAACAACCATCTATTGTCTGCATCTGGAAGTGGACGTTATGAATCATCAGAAATTTTTCTTGGAAAAGAGGCTAGGGATGCTTACTACGATGAACAAGACAATTCCCATGAAGATGACGAATTGTCTGTGAGTGGATCAGGAACTGTTGTTGTACGATCTCCAAGAGGATATCAGTCATCTATTCCTTTTAGTGATCAAAGTAGTCTGTCTAGCAATACATATGCTTCTCTTGAGGATGCTTCTACCAGTGGCACTGTTGTTATTCGTAGTCATCATGATGATTCTGATTCTCCTCGAACGCCAAAGTCTAGATTGGGAATCCAAGAAAGGACATCAACTGCCCCACCTGAAGATAGTGCAATAAACCTTGCTGAGGCAAAGGCTGCTATGCAAGGAGGCTTGAGGAAAGGAAATGCTCGTGAGAGGTCTGTATTGGGCAAGGTCAACAAAGATGAGCAGGAAAAAAGAAAAACAGAGCAAATTACAAGCAGCTCTGACTCTTCCAGACATTCTCGTGAGTACTATGATGCACCAAAAGCGTTTGCAAGGTCGCGCCAATCAAGTGATGATGATGAAAGTGCAAGAGCTGCTGTATTGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAGGCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCACTCATAAATATGGAGCGCACAAAGCCTGGGTCCTGTGAAGTTCTTGTCAGCAAGTTACTTCAACACTTGGCTAGTTCAAAGGAATCTTCATTGAAAGACCTTCAGGAGCTGGCAACTCGCGTCTTCACCAAGGGCAAGACAGCTCCTGAAGAAGCAGAAAATGCAAATGCAGAAGCCGATAACAGGAAAAGACAACAGAACAAGGAACTTAACTCGAATCCCAATCTAAGCCCACTTGCAAGGTTCCTCCTCTCAAGATGGCAAGGCCAAGTTTCAAGGGATCTGAGCCCAGCTTAA 2121 43.14 MAEAAAIMDATGSRFSSLELIGRGSFGDVYKGFDKELNKDVAIKVIDLEEAEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLIQSGQPLDEMSIACILRDLLHAIEYLHNEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPRLLERIRERPKYQIKDDAETPRNGPKGIGEGSDTVKVTRDSRGEETVRASSQGKTLRNAGWDFSLSGSQSTGTVRSVIRPPQARERKPEVSYQAPSRKTADSNNHLLSASGSGRYESSEIFLGKEARDAYYDEQDNSHEDDELSVSGSGTVVVRSPRGYQSSIPFSDQSSLSSNTYASLEDASTSGTVVIRSHHDDSDSPRTPKSRLGIQERTSTAPPEDSAINLAEAKAAMQGGLRKGNARERSVLGKVNKDEQEKRKTEQITSSSDSSRHSREYYDAPKAFARSRQSSDDDESARAAVLSSSKALSILFIPSLKEAGLDDSKGAIGHAVANALINMERTKPGSCEVLVSKLLQHLASSKESSLKDLQELATRVFTKGKTAPEEAENANAEADNRKRQQNKELNSNPNLSPLARFLLSRWQGQVSRDLSPA* 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2416076 2441445 - Vvi19g189 Vvi19g189 781688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g189 706 MobiDBLite consensus disorder prediction 422 464 - -
Vvi19g189 706 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 704 - -
Vvi19g189 706 Gene3D Transferase(Phosphotransferase) domain 1 12 299 - -
Vvi19g189 706 CDD STKc_MST3_like 13 287 - -
Vvi19g189 706 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 704 - -
Vvi19g189 706 MobiDBLite consensus disorder prediction 650 684 - -
Vvi19g189 706 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vvi19g189 706 MobiDBLite consensus disorder prediction 477 494 - -
Vvi19g189 706 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g189 706 MobiDBLite consensus disorder prediction 322 351 - -
Vvi19g189 706 MobiDBLite consensus disorder prediction 369 389 - -
Vvi19g189 706 MobiDBLite consensus disorder prediction 659 675 - -
Vvi19g189 706 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g189 706 MobiDBLite consensus disorder prediction 278 389 - -
Vvi19g189 706 MobiDBLite consensus disorder prediction 278 297 - -
Vvi19g189 706 SUPERFAMILY Protein kinase-like (PK-like) 13 299 IPR011009 -
Vvi19g189 706 MobiDBLite consensus disorder prediction 307 321 - -
Vvi19g189 706 MobiDBLite consensus disorder prediction 516 539 - -
Vvi19g189 706 Coils Coil 41 68 - -
Vvi19g189 706 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g189 706 MobiDBLite consensus disorder prediction 405 550 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76414 PF00069 Pkinase 5.30E-69 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g189 K08838 - vvi:100258981 1349.34