Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g19 ATGCAGAAAGATCTGCCAAAGAAGGGCCTAAAAGAGAAGGACTTCTTCACTGGGTATGGTGAGGCCAATCGGTATAAAATTCTTGAAGTTGTAGGGAAGGGAAGCTATGGAGTTGTTTGCTCTGCCATAGACACACACACTGGGGAAAAGGTGGCTATAAAGAAAATAAATGATATTTTCGAGCACATTTCTGATGCTATTCGGATCCTGCGTGAAATCAAGTTGCTAAGGCTTTTACGTCATCCTGATATTGTTGAAATCAAACGCATCATGTTGCCACCGTCAAGTAGGGAGTTCAAAGACATATATGTTGTTTTTGAGCTTATGGAGTCTGATCTTCACCAAGTGATCAAAGCTAATGATGATTTGACTCGTGAACATCAACAGTTTTTCCTTTACCAACTGCTACGCGCCTTAAAATATATGCACACAGCAAATGTGTATCATCGAGATCTTAAACCCAAGAATATATTGGCAAATGCAAATTGCAAGCTCAAAATTTGTGATTTTGGATTAGCAAGAGTTGCATTTAATGATACCCCTACAACAATATTTTGGACAGACTATGTTGCTACAAGATGGTATAGGGCTCCGGAGCTGTGTGGGTCATTCTTCTCTAAGTATACACCCGCAATTGATATTTGGAGTATTGGCTGCATTTTTGCTGAGGTATTGACTGGGAAACCACTGTTTCCTGGTAAAAGTGTCGTTCATCAGTTAGATTTGATGACTGATCTTCTTGGGACACCTTCATTGGATGCGATTTCTAAAGTTCGAAATGACAAGGCAAGAAAATACTTGACAGAGATGCGGAAAAAGCATCCTGTGCCATTTTCACAGAAATTTCCTAATGCAGATCCTTTGGCACTACGGCTATTAGAAAGATTGTTAGCATTTGATCCGATGGACCGGCCTACCGCTGAAGAGGCACTGGCTGATCCTTACTTTAAGGGCCTGGCCAAAGTTGAGAGAGAACCTTCTTGTCAGTCAATCTCGAAGTTAGAGTTTGACTTTGAGAGGCGAAGGGTGACAAAGGAAGATGTTAAAGAACTAATCTTTCGGGAGATACTAGAATACCATCCTCAGTTACTCAAAGACTACATTAACAGAACTGAAGAAACAAATGTTCTATATCCTAGTGCTATTGGCCAATTCCGAAAGCATTTTGCACATTTTGAGGAAAATGGTGGAAGAAGTGGACCAGTAATTCCTCCGGAGAGGAAGCATGTCTCCCTCCCAAGGTCTACAGTTGTTCATTCAAGCACAGCTACTCTTAATGCGCACCCAAATTTAACCTCATTTGAGAACCAGAAAATTGCAGAAGAGGCTTGTAAGAACTACAGAGTCACTGGTACGATTTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAGCAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAAATCTCAAAGATACCTTAACAAGCATTGCAACTCTCCCTCAATCTGTCTCACCAAATTGCATTTTTAGAACGAATACAATAAGTCAAGAGAAGTCAACAACAGAAGCTTTAAAGGATTCTTCACAAGACAAGCAGCCATCTCCTCAAAGTAACATGGCAACCAAACCTGCCCCAGTCACGGGCATTGACATCAACATCAACCCATACCAACCGCAACCCAAGGCAGACCAATTAAACCAGCGAATAGCAATTGACCTAAAGCTGTTGCAGGCACAATCGCAGTTTAGTGCAATTGGCACTCCCGCTGTTGCAGTACCAGCATCACATCCCCTACATTAA 1797 42.01 MQKDLPKKGLKEKDFFTGYGEANRYKILEVVGKGSYGVVCSAIDTHTGEKVAIKKINDIFEHISDAIRILREIKLLRLLRHPDIVEIKRIMLPPSSREFKDIYVVFELMESDLHQVIKANDDLTREHQQFFLYQLLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLMTDLLGTPSLDAISKVRNDKARKYLTEMRKKHPVPFSQKFPNADPLALRLLERLLAFDPMDRPTAEEALADPYFKGLAKVEREPSCQSISKLEFDFERRRVTKEDVKELIFREILEYHPQLLKDYINRTEETNVLYPSAIGQFRKHFAHFEENGGRSGPVIPPERKHVSLPRSTVVHSSTATLNAHPNLTSFENQKIAEEACKNYRVTGTISGNLMKASRPPPRVPTAKPGRVVGPVLPYENGRNLKDTLTSIATLPQSVSPNCIFRTNTISQEKSTTEALKDSSQDKQPSPQSNMATKPAPVTGIDININPYQPQPKADQLNQRIAIDLKLLQAQSQFSAIGTPAVAVPASHPLH* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 224298 234190 + Vvi19g19 Vvi19g19 781518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g19 598 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g19 598 MobiDBLite consensus disorder prediction 517 550 - -
Vvi19g19 598 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g19 598 SUPERFAMILY Protein kinase-like (PK-like) 19 320 IPR011009 -
Vvi19g19 598 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 10 481 - -
Vvi19g19 598 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vvi19g19 598 MobiDBLite consensus disorder prediction 455 475 - -
Vvi19g19 598 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g19 598 MobiDBLite consensus disorder prediction 517 542 - -
Vvi19g19 598 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vvi19g19 598 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 481 - -
Vvi19g19 598 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi19g19 598 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vvi19g19 598 CDD STKc_TDY_MAPK 24 361 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76415 PF00069 Pkinase 1.90E-66 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g19 - K04371 vvi:100250338 1179.47